ENSDARG00000101549


Danio rerio

Features
Gene ID: ENSDARG00000101549
  
Biological name :nkx2.2b
  
Synonyms : NK2 homeobox 2b / nkx2.2b
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 48782068
Gene end: 48785991
  
Corresponding Affymetrix probe sets: Dr.23851.1.A1_at (Zebrafish Array)   NM_001007782_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000131321
NCBI entrez gene - 493627     See in Manteia.
RefSeq - NM_001007782
RefSeq Peptide - NP_001007783
swissprot - Q5BJA8
ZFIN ID - ZDB-GENE-050217-3
Ensembl - ENSDARG00000101549
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q90481 / nkx2.2a / NK2 homeobox 2a / NKX2-2* / O95096* / NK2 homeobox 2*ENSDARG0000005329854
nkx2.4b / NK2 homeobox 4bENSDARG0000010410735
nkx2.1 / NK2 homeobox 1 / Q9H2Z4* / P43699* / P50220* / Q9EQM3* / NKX2-4* / NK2 homeobox 4* / Homeobox protein Nkx-2.1 * / Homeobox protein Nkx-2.4 *ENSDARG0000001983533
nkx2.4a / NK2 homeobox 4aENSDARG0000007510733
nkx2.5 / NK2 homeobox 5 / Q8TAU0* / P42582* / P43688* / P52952* / P97334* / A6NCS4* / NKX2-3* / NKX2-6* / NK2 homeobox 3* / NK2 homeobox 6* / Homeobox protein Nkx-2.6 * / Homeobox protein N...ENSDARG0000001800432
nkx2.3 / NK2 homeobox 3 / Q8TAU0* / P42582* / P43688* / P52952* / P97334* / A6NCS4* / NKX2-5* / NKX2-6* / NK2 homeobox 5* / NK2 homeobox 6* / Homeobox protein Nkx-2.6 * / Homeobox protein N...ENSDARG0000003909531
nkx2.7 / NK2 transcription factor related 7 / Q8TAU0* / NKX2-6* / P42582* / P43688* / P52952* / P97334* / A6NCS4* / NKX2-3* / NKX2-5* / NK2 homeobox 3* / NK2 homeobox 5* / NK2 homeobox 6* /...ENSDARG0000002123231
nkx3.2 / NK3 homeobox 2 / P78367*ENSDARG0000003763925
nkx3.3 / NK3 homeobox 3ENSDARG0000006932722
hmx4 / H6 family homeobox 4ENSDARG0000000794120
hmx1 / H6 family homeobox 1 / O70218* / Q9NP08* / Homeobox protein HMX1 *ENSDARG0000009565120
hmx3a / H6 family homeobox 3a / HMX3* / P42581* / A6NHT5* / H6 family homeobox 3* / Homeobox protein HMX3 *ENSDARG0000007095520
nkx3-1 / NK3 homeobox 1 / P97436* / Q99801*ENSDARG0000007828019
hmx3b / H6 family homeobox 3bENSDARG0000009671619
hmx2 / H6 family homeobox 2 / A2RU54* / P43687* / Homeobox protein HMX2 *ENSDARG0000007095419


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0021508 floor plate formation IMP
 biological_processGO:0021514 ventral spinal cord interneuron differentiation IGI
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000778 spinal cord interneuron spinal cord interneuron cellular quality , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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