ENSDARG00000070955


Danio rerio

Features
Gene ID: ENSDARG00000070955
  
Biological name :hmx3a
  
Synonyms : H6 family homeobox 3a / hmx3a
  
Possible biological names infered from orthology : A6NHT5 / H6 family homeobox 3 / HMX3 / Homeobox protein HMX3 / P42581
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 21790606
Gene end: 21793113
  
Corresponding Affymetrix probe sets: Dr.10448.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000095383
NCBI entrez gene - 60310     See in Manteia.
RefSeq - NM_131634
RefSeq - XM_005158695
RefSeq Peptide - NP_571709
swissprot - F1QMB1
ZFIN ID - ZDB-GENE-001020-1
Ensembl - ENSDARG00000070955
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HMX3ENSGALG00000023415Gallus gallus
 HMX3ENSG00000188620Homo sapiens
 Hmx3ENSMUSG00000040148Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hmx1 / H6 family homeobox 1 / O70218* / Q9NP08* / Homeobox protein HMX1 *ENSDARG0000009565140
hmx3b / H6 family homeobox 3bENSDARG0000009671637
hmx2 / H6 family homeobox 2 / A2RU54* / P43687* / Homeobox protein HMX2 *ENSDARG0000007095434
hmx4 / H6 family homeobox 4ENSDARG0000000794128
nkx3.2 / NK3 homeobox 2 / P78367*ENSDARG0000003763925
nkx2.3 / NK2 homeobox 3 / Q8TAU0* / P42582* / P43688* / P52952* / P97334* / A6NCS4* / NKX2-5* / NKX2-6* / NK2 homeobox 5* / NK2 homeobox 6* / Homeobox protein Nkx-2.6 * / Homeobox protein N...ENSDARG0000003909522
nkx3.3 / NK3 homeobox 3ENSDARG0000006932721
nkx2.5 / NK2 homeobox 5 / Q8TAU0* / P42582* / P43688* / P52952* / P97334* / A6NCS4* / NKX2-3* / NKX2-6* / NK2 homeobox 3* / NK2 homeobox 6* / Homeobox protein Nkx-2.6 * / Homeobox protein N...ENSDARG0000001800421
nkx2.7 / NK2 transcription factor related 7 / Q8TAU0* / NKX2-6* / P42582* / P43688* / P52952* / P97334* / A6NCS4* / NKX2-3* / NKX2-5* / NK2 homeobox 3* / NK2 homeobox 5* / NK2 homeobox 6* /...ENSDARG0000002123221
nkx3-1 / NK3 homeobox 1 / P97436* / Q99801*ENSDARG0000007828020
nkx2.4a / NK2 homeobox 4aENSDARG0000007510719
nkx2.4b / NK2 homeobox 4bENSDARG0000010410718
nkx2.1 / NK2 homeobox 1 / Q9H2Z4* / P43699* / P50220* / Q9EQM3* / NKX2-4* / NK2 homeobox 4* / Homeobox protein Nkx-2.1 * / Homeobox protein Nkx-2.4 *ENSDARG0000001983517
nkx2.2b / NK2 homeobox 2bENSDARG0000010154916
Q90481 / nkx2.2a / NK2 homeobox 2a / NKX2-2* / O95096* / NK2 homeobox 2*ENSDARG0000005329816


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR020479  Homeobox domain, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000940 posterior lateral line neuromast posterior lateral line neuromast decreased amount , abnormal
Show

 ZFA:0001094 whole organism whole organism balance , abnormal
whole organism decreased coordination , abnormal
Show

 ZFA:0001617 otolith otolith fused with otolith , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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