ENSGALG00000014976


Gallus gallus

Features
Gene ID: ENSGALG00000014976
  
Biological name :GATA6
  
Synonyms : GATA6 / transcription factor GATA-6
  
Possible biological names infered from orthology : GATA binding protein 6 / Q61169 / Q92908
  
Species: Gallus gallus
  
Chr. number: 2
Strand: 1
Band:
Gene start: 102935684
Gene end: 102951602
  
Corresponding Affymetrix probe sets: Gga.2061.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000030913
NCBI entrez gene - 396390     See in Manteia.
RefSeq - NM_205420
RefSeq - XM_015277935
RefSeq - XM_015277936
RefSeq Peptide - NP_990751
swissprot - F1N9N1
Ensembl - ENSGALG00000014976
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gata6ENSDARG00000103589Danio rerio
 GATA6ENSG00000141448Homo sapiens
 Gata6ENSMUSG00000005836Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GATA4 / GATA binding protein 4 / P43694* / Q08369* / Transcription factor GATA-4 *ENSGALG0000001666254
GATA5 / transcription factor GATA-5 / P97489* / Q9BWX5* / GATA binding protein 5*ENSGALG0000000535253
GATA2 / P23824 / GATA-binding factor 2 / O09100* / P23769* / GATA binding protein 2* / Mus musculus GATA binding protein 2 (Gata2), transcript variant 2, mRNA.*ENSGALG0000000590933
GATA3 / P23825 / GATA-binding factor 3 / P23771* / P23772* / GATA binding protein 3* / Mus musculus GATA binding protein 3 (Gata3), transcript variant 3, mRNA.*ENSGALG0000002927032
TRPS1 / transcriptional repressor GATA binding 1 / Q9UHF7*ENSGALG0000003170023


Protein motifs (from Interpro)
Interpro ID Name
 IPR000679  Zinc finger, GATA-type
 IPR008013  GATA-type transcription activator, N-terminal
 IPR013088  Zinc finger, NHR/GATA-type
 IPR016375  Transcription factor GATA-4/5/6


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0001889 liver development IEA
 biological_processGO:0003148 outflow tract septum morphogenesis IEA
 biological_processGO:0003309 type B pancreatic cell differentiation IEA
 biological_processGO:0003310 pancreatic A cell differentiation IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006644 phospholipid metabolic process IEA
 biological_processGO:0007493 endodermal cell fate determination IEA
 biological_processGO:0008584 male gonad development IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0014898 cardiac muscle hypertrophy in response to stress IEA
 biological_processGO:0030855 epithelial cell differentiation IEA
 biological_processGO:0031016 pancreas development IEA
 biological_processGO:0032911 negative regulation of transforming growth factor beta1 production IEA
 biological_processGO:0032912 negative regulation of transforming growth factor beta2 production IEA
 biological_processGO:0035239 tube morphogenesis IEA
 biological_processGO:0035987 endodermal cell differentiation IEA
 biological_processGO:0042493 response to drug IEA
 biological_processGO:0043066 negative regulation of apoptotic process IEA
 biological_processGO:0043627 response to estrogen IEA
 biological_processGO:0045766 positive regulation of angiogenesis IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048645 animal organ formation IEA
 biological_processGO:0048738 cardiac muscle tissue development IEA
 biological_processGO:0051145 smooth muscle cell differentiation IEA
 biological_processGO:0051891 positive regulation of cardioblast differentiation IEA
 biological_processGO:0055007 cardiac muscle cell differentiation IEA
 biological_processGO:0060045 positive regulation of cardiac muscle cell proliferation IEA
 biological_processGO:0060430 lung saccule development IEA
 biological_processGO:0060486 Clara cell differentiation IEA
 biological_processGO:0060510 type II pneumocyte differentiation IEA
 biological_processGO:0060575 intestinal epithelial cell differentiation IEA
 biological_processGO:0060947 cardiac vascular smooth muscle cell differentiation IEA
 biological_processGO:0070848 response to growth factor IEA
 biological_processGO:0071158 positive regulation of cell cycle arrest IEA
 biological_processGO:0071371 cellular response to gonadotropin stimulus IEA
 biological_processGO:0071456 cellular response to hypoxia IEA
 biological_processGO:0071773 cellular response to BMP stimulus IEA
 biological_processGO:0110024 positive regulation of cardiac muscle myoblast proliferation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005667 transcription factor complex IEA
 cellular_componentGO:0031965 nuclear membrane IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IEA
 molecular_functionGO:0001103 RNA polymerase II repressing transcription factor binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003705 transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding IEA
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0019901 protein kinase binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Surfactant metabolism
Factors involved in megakaryocyte development and platelet production


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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