ENSG00000139174


Homo sapiens

Features
Gene ID: ENSG00000139174
  
Biological name :PRICKLE1
  
Synonyms : PRICKLE1 / prickle planar cell polarity protein 1 / Q96MT3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: -1
Band: q12
Gene start: 42456757
Gene end: 42590355
  
Corresponding Affymetrix probe sets: 226065_at (Human Genome U133 Plus 2.0 Array)   226069_at (Human Genome U133 Plus 2.0 Array)   230708_at (Human Genome U133 Plus 2.0 Array)   232811_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000492332
Ensembl peptide - ENSP00000492763
Ensembl peptide - ENSP00000492644
Ensembl peptide - ENSP00000492483
Ensembl peptide - ENSP00000345064
Ensembl peptide - ENSP00000398947
Ensembl peptide - ENSP00000401060
Ensembl peptide - ENSP00000446699
Ensembl peptide - ENSP00000446970
Ensembl peptide - ENSP00000447870
Ensembl peptide - ENSP00000448359
Ensembl peptide - ENSP00000449819
Ensembl peptide - ENSP00000491051
Ensembl peptide - ENSP00000491228
Ensembl peptide - ENSP00000491473
NCBI entrez gene - 144165     See in Manteia.
OMIM - 608500
RefSeq - XM_017018840
RefSeq - XM_017018839
RefSeq - XM_017018838
RefSeq - XM_011537947
RefSeq - NM_001144881
RefSeq - NM_001144882
RefSeq - NM_001144883
RefSeq - XM_011537946
RefSeq - NM_153026
RefSeq Peptide - NP_001138353
RefSeq Peptide - NP_001138354
RefSeq Peptide - NP_001138355
RefSeq Peptide - NP_694571
swissprot - Q96MT3
swissprot - A0A1W2PPC7
swissprot - F8W1Q8
swissprot - F8W1J1
swissprot - F8VUG8
swissprot - A0A024R0W7
Ensembl - ENSG00000139174
  
Related genetic diseases (OMIM): 612437 - Epilepsy, progressive myoclonic 1B, 612437
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 prickle1aENSDARG00000040649Danio rerio
 prickle1bENSDARG00000045694Danio rerio
 PRICKLE1ENSGALG00000009556Gallus gallus
 Q3U5C7ENSMUSG00000036158Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q7Z3G6 / PRICKLE2 / prickle planar cell polarity protein 2ENSG0000016363751
O43900 / PRICKLE3 / prickle planar cell polarity protein 3ENSG0000001221132
Q2TBC4 / PRICKLE4 / prickle planar cell polarity protein 4ENSG0000027822418
AL365205.1ENSG0000012459318
TES / Q9UGI8 / testin LIM domain proteinENSG0000013526915
LMCD1 / Q9NZU5 / LIM and cysteine rich domains 1ENSG0000007128212


Protein motifs (from Interpro)
Interpro ID Name
 IPR001781  Zinc finger, LIM-type
 IPR010442  PET domain
 IPR033723  PET prickle
 IPR033726  LIM2 prickle
 IPR033727  LIM3 prickle


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001843 neural tube closure IMP
 biological_processGO:0006606 protein import into nucleus IMP
 biological_processGO:0031398 positive regulation of protein ubiquitination IDA
 biological_processGO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process IDA
 biological_processGO:0035904 aorta development IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IDA
 biological_processGO:0060071 Wnt signaling pathway, planar cell polarity pathway NAS
 biological_processGO:0060976 coronary vasculature development IEA
 biological_processGO:0090090 negative regulation of canonical Wnt signaling pathway IDA
 biological_processGO:2000691 negative regulation of cardiac muscle cell myoblast differentiation IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031965 nuclear membrane IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Asymmetric localization of PCP proteins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000726 Dementia 
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 HP:0000992 Photosensitivity "An increased sensitivity of the skin to light. Photosensitivity may result in a rash upon exposure to the sun (which is known as photodermatosis). Photosensitivity can be diagnosed by phototests in which light is shone on small areas of skin." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001310 Dysmetria 
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0002070 Limb ataxia 
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 HP:0002080 Intention tremor "An oscillatory cerebellar ataxia that tends to be absent when the limbs are inactive and during the first part of voluntary movement but worsening as the movement continues and greater precision is required (e.g., in touching a target such as the patient s nose or a physician s finger)." [HPO:curators]
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 HP:0002123 Myoclonic seizures "Myoclonic seizures are sudden, brief losses of consciousness and postural tone not associated with tonic muscular contractions. Myoclonic seizures may involve one body part or the entire body. In the latter case, the myoclonic seizure is accompanied by a violent fall but not by loss of consciousness." [HPO:curators]
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 HP:0002392 EEG shows 3-4-Hz spike and multispike slow wave complexes 
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 HP:0003390 Sensory axonal neuropathy "An axonal neuropathy of peripheral sensory nerves." [HPO:curators]
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003676 Progressive disorder 
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 HP:0007000 Morning myoclonic jerks 
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 HP:0010819 Atonic seizures "A type of `seizure` (HP:0001250) characterized by a suddenloss of musle tone. Usually, consciousness is retained. In an atonic seizure, the eyelids may droop, the head may nod, and the person may drop things and fall to the ground." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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