ENSDARG00000045694


Danio rerio

Features
Gene ID: ENSDARG00000045694
  
Biological name :prickle1b
  
Synonyms : prickle1b / prickle homolog 1b
  
Possible biological names infered from orthology : PRICKLE1 / Prickle-like protein 1 / prickle planar cell polarity protein 1 / Q3U5C7 / Q96MT3
  
Species: Danio rerio
  
Chr. number: 4
Strand: -1
Band:
Gene start: 13963499
Gene end: 13995766
  
Corresponding Affymetrix probe sets: Dr.439.1.A1_at (Zebrafish Array)   NM_001030098_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000118988
Ensembl peptide - ENSDARP00000067176
Ensembl peptide - ENSDARP00000119885
NCBI entrez gene - 556148     See in Manteia.
RefSeq - NM_001030098
RefSeq - XM_005164634
RefSeq Peptide - NP_001025269
swissprot - F2Z4V3
swissprot - B7ZD69
swissprot - Q5SP54
ZFIN ID - ZDB-GENE-030131-2152
Ensembl - ENSDARG00000045694
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PRICKLE1ENSGALG00000009556Gallus gallus
 Q96MT3ENSG00000139174Homo sapiens
 Q3U5C7ENSMUSG00000036158Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
prickle1a / prickle homolog 1a / Q96MT3* / Q3U5C7* / PRICKLE1* / Prickle-like protein 1 * / prickle planar cell polarity protein 1*ENSDARG0000004064959
prickle2b / prickle homolog 2b / Q7Z3G6* / Q80Y24* / PRICKLE2* / prickle planar cell polarity protein 2*ENSDARG0000003759341
prickle2a / prickle homolog 2a / Q7Z3G6* / PRICKLE2* / prickle planar cell polarity protein 2*ENSDARG0000002098238
prickle3 / prickle homolog 3 / O43900* / Q80VL3* / prickle planar cell polarity protein 3*ENSDARG0000007399626
tes / testis derived transcript (3 LIM domains) / Gm4985* / Q9UGI8* / Gm4907* / testin LIM domain protein* / testis derived transcript*ENSDARG0000005185714
lmcd1 / LIM and cysteine-rich domains 1 / Q8VEE1* / Q9NZU5*ENSDARG0000000200210


Protein motifs (from Interpro)
Interpro ID Name
 IPR001781  Zinc finger, LIM-type
 IPR010442  PET domain
 IPR033723  PET prickle
 IPR033725  LIM1 prickle
 IPR033726  LIM2 prickle
 IPR033727  LIM3 prickle


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001764 neuron migration IMP
 biological_processGO:0021754 facial nucleus development IMP
 biological_processGO:0021934 hindbrain tangential cell migration IMP
 biological_processGO:0097475 motor neuron migration IMP
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Asymmetric localization of PCP proteins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000206 facial nerve motor nucleus facial nerve motor nucleus motor neuron mislocalised , abnormal
facial nerve motor nucleus mislocalised anteriorly , abnormal
facial nerve motor nucleus motor neuron migration arrested , abnormal
facial nerve motor nucleus motor neuron increased amount , abnormal
facial nerve motor nucleus motor neuron displaced to rhombomere 4 , abnormal
facial nerve motor nucleus nucleus physical object quality , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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