ENSGALG00000008431


Gallus gallus

Features
Gene ID: ENSGALG00000008431
  
Biological name :SMARCA1
  
Synonyms : SMARCA1 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1
  
Possible biological names infered from orthology : Mus musculus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 (Smarca1), transcript variant 3, mRNA. / P28370 / Q6PGB8
  
Species: Gallus gallus
  
Chr. number: 4
Strand: 1
Band:
Gene start: 14366404
Gene end: 14393478
  
Corresponding Affymetrix probe sets: Gga.2597.1.S1_at (Chicken Array)   GgaAffx.22585.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000046735
Ensembl peptide - ENSGALP00000013722
NCBI entrez gene - 422358     See in Manteia.
RefSeq - XM_420329
RefSeq - XM_004940824
swissprot - F1P3Q4
swissprot - A0A1D5P241
Ensembl - ENSGALG00000008431
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smarca1ENSDARG00000012776Danio rerio
 P28370ENSG00000102038Homo sapiens
 Q6PGB8ENSMUSG00000031099Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SMARCA5 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 / O60264* / Q91ZW3*ENSGALG0000000991384
CHD1L / chromodomain helicase DNA binding protein 1 like / Q86WJ1* / Q9CXF7*ENSGALG000000150385


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR001005  SANT/Myb domain
 IPR001650  Helicase, C-terminal
 IPR009057  Homeobox-like domain superfamily
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR015194  ISWI, HAND domain
 IPR015195  SLIDE domain
 IPR017884  SANT domain
 IPR020838  DBINO domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR029915  ISWI family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006338 chromatin remodeling IEA
 biological_processGO:0007420 brain development IEA
 biological_processGO:0030182 neuron differentiation IEA
 biological_processGO:0043044 ATP-dependent chromatin remodeling IEA
 biological_processGO:2000177 regulation of neural precursor cell proliferation IEA
 cellular_componentGO:0000790 nuclear chromatin IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0016589 NURF complex IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA
 molecular_functionGO:0016887 ATPase activity IEA
 molecular_functionGO:0031491 nucleosome binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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