ENSGALG00000009913


Gallus gallus

Features
Gene ID: ENSGALG00000009913
  
Biological name :SMARCA5
  
Synonyms : SMARCA5 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
  
Possible biological names infered from orthology : O60264 / Q91ZW3
  
Species: Gallus gallus
  
Chr. number: 4
Strand: 1
Band:
Gene start: 30830193
Gene end: 30853810
  
Corresponding Affymetrix probe sets: GgaAffx.11920.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000037818
Ensembl peptide - ENSGALP00000016102
NCBI entrez gene - 422457     See in Manteia.
RefSeq - XM_015276722
RefSeq - XM_004940953
swissprot - Q5ZLB7
swissprot - E1C0M8
Ensembl - ENSGALG00000009913
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 O60264ENSG00000153147Homo sapiens
 Q91ZW3ENSMUSG00000031715Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SMARCA1 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 / P28370* / Q6PGB8* / Mus musculus SWI/SNF related, matrix associated, actin depe...ENSGALG0000000843183
CHD1L / chromodomain helicase DNA binding protein 1 like / Q86WJ1* / Q9CXF7*ENSGALG000000150385


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR001005  SANT/Myb domain
 IPR001650  Helicase, C-terminal
 IPR009057  Homeobox-like domain superfamily
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR015194  ISWI, HAND domain
 IPR015195  SLIDE domain
 IPR017884  SANT domain
 IPR020838  DBINO domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR029915  ISWI family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000183 chromatin silencing at rDNA IEA
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006333 chromatin assembly or disassembly IEA
 biological_processGO:0006334 nucleosome assembly IEA
 biological_processGO:0006338 chromatin remodeling IEA
 biological_processGO:0006352 DNA-templated transcription, initiation IEA
 biological_processGO:0016584 nucleosome positioning IEA
 biological_processGO:0043044 ATP-dependent chromatin remodeling IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:1990830 cellular response to leukemia inhibitory factor IEA
 cellular_componentGO:0000793 condensed chromosome IEA
 cellular_componentGO:0001650 fibrillar center IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005677 chromatin silencing complex IEA
 cellular_componentGO:0016589 NURF complex IEA
 cellular_componentGO:0031010 ISWI-type complex IEA
 cellular_componentGO:0031213 RSF complex IEA
 cellular_componentGO:0043596 nuclear replication fork IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA
 molecular_functionGO:0016887 ATPase activity IEA
 molecular_functionGO:0031491 nucleosome binding IEA
 molecular_functionGO:0042393 histone binding IEA


Pathways (from Reactome)
Pathway description
B-WICH complex positively regulates rRNA expression
Deposition of new CENPA-containing nucleosomes at the centromere


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000039068 RSF1 / remodeling and spacing factor 1 / Q96T23*  / complex
 ENSGALG00000042491 P62801 / Histone H4   / complex
 ENSGALG00000037735 CENPA / histone H3-like centromeric protein A / O35216* / P49450* / centromere protein A*  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr