ENSGALG00000039068


Gallus gallus

Features
Gene ID: ENSGALG00000039068
  
Biological name :RSF1
  
Synonyms : remodeling and spacing factor 1 / RSF1
  
Possible biological names infered from orthology : Q96T23
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 192997841
Gene end: 193049138
  
Corresponding Affymetrix probe sets: Gga.12896.1.S1_s_at (Chicken Array)   GgaAffx.143.1.S1_at (Chicken Array)   GgaAffx.25349.1.S1_at (Chicken Array)   GgaAffx.25349.2.S1_s_at (Chicken Array)   GgaAffx.25349.3.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000049227
Ensembl peptide - ENSGALP00000060528
NCBI entrez gene - 426483     See in Manteia.
RefSeq - XM_424124
swissprot - A0A1D5P927
swissprot - A0A1L1RP06
Ensembl - ENSGALG00000039068
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rsf1b.1ENSDARG00000093503Danio rerio
 rsf1b.1ENSDARG00000068640Danio rerio
 RSF1ENSG00000048649Homo sapiens
 Rsf1ENSMUSG00000035623Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001965  Zinc finger, PHD-type
 IPR011011  Zinc finger, FYVE/PHD-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR019786  Zinc finger, PHD-type, conserved site
 IPR019787  Zinc finger, PHD-finger
 IPR028938  Remodeling and spacing factor 1
 IPR028942  WHIM1 domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006334 nucleosome assembly IEA
 biological_processGO:0006338 chromatin remodeling IEA
 biological_processGO:0006352 DNA-templated transcription, initiation IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0016584 nucleosome positioning IEA
 biological_processGO:0043392 negative regulation of DNA binding IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0050434 positive regulation of viral transcription IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0031213 RSF complex IEA
 molecular_functionGO:0042393 histone binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Deposition of new CENPA-containing nucleosomes at the centromere


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000009913 SMARCA5 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 / O60264* / Q91ZW3*  / complex
 ENSGALG00000042491 P62801 / Histone H4   / complex
 ENSGALG00000037735 CENPA / histone H3-like centromeric protein A / O35216* / P49450* / centromere protein A*  / complex






 

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