ENSGALG00000008496


Gallus gallus

Features
Gene ID: ENSGALG00000008496
  
Biological name :VPS18
  
Synonyms : VPS18 / VPS18, CORVET/HOPS core subunit
  
Possible biological names infered from orthology : Q8R307 / Q9P253
  
Species: Gallus gallus
  
Chr. number: 5
Strand: 1
Band:
Gene start: 24290783
Gene end: 24299635
  
Corresponding Affymetrix probe sets: GgaAffx.5352.3.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000013826
NCBI entrez gene - 423207     See in Manteia.
RefSeq - NM_001199655
RefSeq Peptide - NP_001186584
swissprot - E1BSK2
Ensembl - ENSGALG00000008496
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vps18ENSDARG00000070433Danio rerio
 VPS18ENSG00000104142Homo sapiens
 Vps18ENSMUSG00000034216Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000547  Clathrin, heavy chain/VPS, 7-fold repeat
 IPR007810  Pep3/Vps18/deep orange
 IPR013083  Zinc finger, RING/FYVE/PHD-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0006904 vesicle docking involved in exocytosis IBA
 biological_processGO:0007032 endosome organization IEA
 biological_processGO:0007040 lysosome organization IEA
 biological_processGO:0008333 endosome to lysosome transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0035542 regulation of SNARE complex assembly IBA
 biological_processGO:0046718 viral entry into host cell IEA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005768 endosome IBA
 cellular_componentGO:0005769 early endosome IEA
 cellular_componentGO:0005770 late endosome IEA
 cellular_componentGO:0005884 actin filament IEA
 cellular_componentGO:0030123 AP-3 adaptor complex IEA
 cellular_componentGO:0030897 HOPS complex IEA
 cellular_componentGO:0033263 CORVET complex IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0019905 syntaxin binding IEA
 molecular_functionGO:0030674 protein binding, bridging IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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