ENSGALG00000008595


Gallus gallus

Features
Gene ID: ENSGALG00000008595
  
Biological name :RTF1
  
Synonyms : RTF1 / RTF1 homolog, Paf1/RNA polymerase II complex component
  
Possible biological names infered from orthology : A2AQ19 / Q92541 / RNA polymerase-associated
  
Species: Gallus gallus
  
Chr. number: 5
Strand: 1
Band:
Gene start: 24609444
Gene end: 24614957
  
Corresponding Affymetrix probe sets: GgaAffx.5416.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000013981
swissprot - F6QYT5
Ensembl - ENSGALG00000008595
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rtf1ENSDARG00000008947Danio rerio
 RTF1ENSG00000137815Homo sapiens
 Rtf1ENSMUSG00000027304Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR031102  RNA polymerase-associated protein Rtf1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0001711 endodermal cell fate commitment IEA
 biological_processGO:0001832 blastocyst growth IEA
 biological_processGO:0006368 transcription elongation from RNA polymerase II promoter IEA
 biological_processGO:0016570 histone modification IEA
 biological_processGO:0019827 stem cell population maintenance IEA
 biological_processGO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0051571 positive regulation of histone H3-K4 methylation IEA
 biological_processGO:0080182 histone H3-K4 trimethylation IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0016593 Cdc73/Paf1 complex IBA
 molecular_functionGO:0001076 transcription factor activity, RNA polymerase II transcription factor binding IBA
 molecular_functionGO:0003697 single-stranded DNA binding IEA
 molecular_functionGO:1990269 RNA polymerase II C-terminal domain phosphoserine binding IBA


Pathways (from Reactome)
Pathway description
RNA Polymerase II Pre-transcription Events
RNA Polymerase II Transcription Elongation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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