ENSGALG00000009177


Gallus gallus

Features
Gene ID: ENSGALG00000009177
  
Biological name :FMR1
  
Synonyms : FMR1 / fragile X mental retardation 1
  
Possible biological names infered from orthology : Q06787
  
Species: Gallus gallus
  
Chr. number: 4
Strand: -1
Band:
Gene start: 18746985
Gene end: 18775248
  
Corresponding Affymetrix probe sets: Gga.12650.1.A1_s_at (Chicken Array)   Gga.15015.1.A1_at (Chicken Array)   Gga.15015.1.S1_at (Chicken Array)   GgaAffx.22825.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000014935
Ensembl peptide - ENSGALP00000056787
Ensembl peptide - ENSGALP00000054759
Ensembl peptide - ENSGALP00000054214
NCBI entrez gene - 422395     See in Manteia.
RefSeq - XM_420363
RefSeq - XM_003641125
RefSeq - XM_004940867
RefSeq - XM_015285261
RefSeq - XM_015285262
swissprot - A0A1D5PPG0
swissprot - A0A1D5PMX7
swissprot - F1NF19
swissprot - A0A1D5PV28
Ensembl - ENSGALG00000009177
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 fmr1ENSDARG00000037433Danio rerio
 FMR1ENSG00000102081Homo sapiens
 Fmr1ENSMUSG00000000838Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
FXR1 / FMR1 autosomal homolog 1 / P51114* / Q61584* / Fragile X mental retardation syndrome-related protein 1 *ENSGALG0000000886458


Protein motifs (from Interpro)
Interpro ID Name
 IPR004087  K Homology domain
 IPR004088  K Homology domain, type 1
 IPR008395  Agenet-like domain
 IPR022034  Fragile X-related 1 protein, C-terminal core
 IPR032196  Fragile X-related mental retardation protein, C-terminal region 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IEA
 biological_processGO:0002092 positive regulation of receptor internalization IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0017148 negative regulation of translation IBA
 biological_processGO:0033129 positive regulation of histone phosphorylation IEA
 biological_processGO:0044830 modulation by host of viral RNA genome replication IEA
 biological_processGO:0045727 positive regulation of translation IEA
 biological_processGO:0051489 regulation of filopodium assembly IEA
 biological_processGO:0060964 regulation of gene silencing by miRNA IEA
 biological_processGO:0060998 regulation of dendritic spine development IEA
 biological_processGO:0098586 cellular response to virus IEA
 biological_processGO:0098908 regulation of neuronal action potential IEA
 biological_processGO:1901254 positive regulation of intracellular transport of viral material IEA
 biological_processGO:1902373 negative regulation of mRNA catabolic process IEA
 biological_processGO:1902416 positive regulation of mRNA binding IEA
 biological_processGO:2000637 positive regulation of gene silencing by miRNA IEA
 biological_processGO:2001022 positive regulation of response to DNA damage stimulus IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005844 polysome IBA
 cellular_componentGO:0019034 viral replication complex IEA
 cellular_componentGO:0030426 growth cone IEA
 cellular_componentGO:0032797 SMN complex IEA
 cellular_componentGO:0036464 cytoplasmic ribonucleoprotein granule IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0043005 neuron projection IEA
 cellular_componentGO:0043204 perikaryon IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 cellular_componentGO:1990124 messenger ribonucleoprotein complex IEA
 cellular_componentGO:1990904 ribonucleoprotein complex IEA
 molecular_functionGO:0002151 G-quadruplex RNA binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IBA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IEA
 molecular_functionGO:0008266 poly(U) RNA binding IEA
 molecular_functionGO:0030371 translation repressor activity IEA
 molecular_functionGO:0031369 translation initiation factor binding IEA
 molecular_functionGO:0033592 RNA strand annealing activity IEA
 molecular_functionGO:0034046 poly(G) binding IEA
 molecular_functionGO:0035064 methylated histone binding IEA
 molecular_functionGO:0035197 siRNA binding IEA
 molecular_functionGO:0035198 miRNA binding IEA
 molecular_functionGO:0035613 RNA stem-loop binding IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0043022 ribosome binding IEA
 molecular_functionGO:0044325 ion channel binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA
 molecular_functionGO:0048027 mRNA 5"-UTR binding IEA
 molecular_functionGO:1990825 sequence-specific mRNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr