ENSG00000102081


Homo sapiens

Features
Gene ID: ENSG00000102081
  
Biological name :FMR1
  
Synonyms : FMR1 / fragile X mental retardation 1 / Q06787
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: 1
Band: q27.3
Gene start: 147911951
Gene end: 147951125
  
Corresponding Affymetrix probe sets: 203689_s_at (Human Genome U133 Plus 2.0 Array)   215245_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000413764
Ensembl peptide - ENSP00000484324
Ensembl peptide - ENSP00000481474
Ensembl peptide - ENSP00000481058
Ensembl peptide - ENSP00000480886
Ensembl peptide - ENSP00000480513
Ensembl peptide - ENSP00000480450
Ensembl peptide - ENSP00000479528
Ensembl peptide - ENSP00000477839
Ensembl peptide - ENSP00000218200
Ensembl peptide - ENSP00000355115
Ensembl peptide - ENSP00000359501
Ensembl peptide - ENSP00000359502
Ensembl peptide - ENSP00000359506
Ensembl peptide - ENSP00000359508
Ensembl peptide - ENSP00000395923
NCBI entrez gene - 2332     See in Manteia.
OMIM - 309550
RefSeq - NM_001185082
RefSeq - NM_002024
RefSeq - NM_001185081
RefSeq - NM_001185075
RefSeq - NM_001185076
RefSeq Peptide - NP_001172011
RefSeq Peptide - NP_002015
RefSeq Peptide - NP_001172004
RefSeq Peptide - NP_001172005
RefSeq Peptide - NP_001172010
swissprot - R9WNI0
swissprot - A0A087X1M7
swissprot - A0A087WY29
swissprot - A0A087WXI3
swissprot - A0A087WXC0
swissprot - A0A087WWU4
swissprot - A0A087WWR6
swissprot - G3V0J0
swissprot - Q06787
swissprot - Q8IXW7
swissprot - A8MQB8
Ensembl - ENSG00000102081
  
Related genetic diseases (OMIM): 300623 - Fragile X tremor/ataxia syndrome, 300623
  300624 - Fragile X syndrome, 300624
  311360 - Premature ovarian failure 1, 311360
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 fmr1ENSDARG00000037433Danio rerio
 FMR1ENSGALG00000009177Gallus gallus
 Fmr1ENSMUSG00000000838Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
FXR1 / P51114 / FMR1 autosomal homolog 1ENSG0000011441652
FXR2 / P51116 / FMR1 autosomal homolog 2ENSG0000012924549


Protein motifs (from Interpro)
Interpro ID Name
 IPR004087  K Homology domain
 IPR004088  K Homology domain, type 1
 IPR008395  Agenet-like domain
 IPR022034  Fragile X-related 1 protein, C-terminal core
 IPR032196  Fragile X-related mental retardation protein, C-terminal region 2
 IPR036612  K Homology domain, type 1 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IDA
 biological_processGO:0002092 positive regulation of receptor internalization IDA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006417 regulation of translation IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0007215 glutamate receptor signaling pathway ISS
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0016032 viral process IEA
 biological_processGO:0031047 gene silencing by RNA IEA
 biological_processGO:0033129 positive regulation of histone phosphorylation IDA
 biological_processGO:0034644 cellular response to UV ISS
 biological_processGO:0043488 regulation of mRNA stability ISS
 biological_processGO:0044830 modulation by host of viral RNA genome replication IMP
 biological_processGO:0045727 positive regulation of translation IDA
 biological_processGO:0045947 negative regulation of translational initiation ISS
 biological_processGO:0046928 regulation of neurotransmitter secretion ISS
 biological_processGO:0051028 mRNA transport ISS
 biological_processGO:0051489 regulation of filopodium assembly IDA
 biological_processGO:0051491 positive regulation of filopodium assembly ISS
 biological_processGO:0060964 regulation of gene silencing by miRNA IMP
 biological_processGO:0060998 regulation of dendritic spine development IDA
 biological_processGO:0060999 positive regulation of dendritic spine development ISS
 biological_processGO:0072711 cellular response to hydroxyurea ISS
 biological_processGO:0098586 cellular response to virus IDA
 biological_processGO:0098908 regulation of neuronal action potential IDA
 biological_processGO:1900453 negative regulation of long term synaptic depression ISS
 biological_processGO:1901254 positive regulation of intracellular transport of viral material IMP
 biological_processGO:1901386 negative regulation of voltage-gated calcium channel activity ISS
 biological_processGO:1901800 positive regulation of proteasomal protein catabolic process ISS
 biological_processGO:1902373 negative regulation of mRNA catabolic process IMP
 biological_processGO:1902416 positive regulation of mRNA binding IDA
 biological_processGO:2000301 negative regulation of synaptic vesicle exocytosis ISS
 biological_processGO:2000637 positive regulation of gene silencing by miRNA IDA
 biological_processGO:2000766 negative regulation of cytoplasmic translation ISS
 biological_processGO:2001022 positive regulation of response to DNA damage stimulus IDA
 cellular_componentGO:0000775 chromosome, centromeric region IEA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005694 chromosome ISS
 cellular_componentGO:0005730 nucleolus TAS
 cellular_componentGO:0005737 cytoplasm TAS
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005844 polysome ISS
 cellular_componentGO:0005845 mRNA cap binding complex ISS
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0010369 chromocenter ISS
 cellular_componentGO:0010494 cytoplasmic stress granule IEA
 cellular_componentGO:0014069 postsynaptic density ISS
 cellular_componentGO:0015030 Cajal body IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0019034 viral replication complex IDA
 cellular_componentGO:0019897 extrinsic component of plasma membrane ISS
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030424 axon ISS
 cellular_componentGO:0030425 dendrite ISS
 cellular_componentGO:0030426 growth cone IEA
 cellular_componentGO:0032433 filopodium tip ISS
 cellular_componentGO:0032797 SMN complex IDA
 cellular_componentGO:0036464 cytoplasmic ribonucleoprotein granule IEA
 cellular_componentGO:0042734 presynaptic membrane IEA
 cellular_componentGO:0042788 polysomal ribosome TAS
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0043005 neuron projection IEA
 cellular_componentGO:0043197 dendritic spine ISS
 cellular_componentGO:0043204 perikaryon ISS
 cellular_componentGO:0043679 axon terminus ISS
 cellular_componentGO:0045202 synapse ISS
 cellular_componentGO:0045211 postsynaptic membrane IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 cellular_componentGO:0071598 neuronal ribonucleoprotein granule ISS
 cellular_componentGO:0097386 glial cell projection ISS
 cellular_componentGO:0098793 presynapse ISS
 cellular_componentGO:0098794 postsynapse ISS
 cellular_componentGO:1902737 dendritic filopodium ISS
 cellular_componentGO:1990124 messenger ribonucleoprotein complex IDA
 cellular_componentGO:1990812 growth cone filopodium ISS
 cellular_componentGO:1990904 ribonucleoprotein complex IDA
 molecular_functionGO:0002151 G-quadruplex RNA binding IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003682 chromatin binding ISS
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding TAS
 molecular_functionGO:0003730 mRNA 3"-UTR binding IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008017 microtubule binding ISS
 molecular_functionGO:0008266 poly(U) RNA binding IDA
 molecular_functionGO:0030371 translation repressor activity IDA
 molecular_functionGO:0031369 translation initiation factor binding IPI
 molecular_functionGO:0033592 RNA strand annealing activity IDA
 molecular_functionGO:0034046 poly(G) binding IDA
 molecular_functionGO:0035064 methylated histone binding IDA
 molecular_functionGO:0035197 siRNA binding IDA
 molecular_functionGO:0035198 miRNA binding IDA
 molecular_functionGO:0035613 RNA stem-loop binding IDA
 molecular_functionGO:0042802 identical protein binding IDA
 molecular_functionGO:0042803 protein homodimerization activity IDA
 molecular_functionGO:0043022 ribosome binding IPI
 molecular_functionGO:0044325 ion channel binding IPI
 molecular_functionGO:0046982 protein heterodimerization activity IDA
 molecular_functionGO:0048027 mRNA 5"-UTR binding IDA
 molecular_functionGO:0070840 dynein complex binding ISS
 molecular_functionGO:1990825 sequence-specific mRNA binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000020 Urinary incontinence "Loss of the ability to control the urinary bladder leading to involuntary urination." [HPO:sdoelken]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000053 Macroorchidism "The presence of abnormally large testes." [HPO:curators]
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000233 Thin vermillion border 
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 HP:0000246 Sinusitis 
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000275 Narrow face 
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 HP:0000276 Long face 
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 HP:0000280 Coarse facial features 
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 HP:0000298 Mask-like facies 
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 HP:0000303 Mandibular prognathia "Abnormal prominence of the chin related to an abnormally long mandible." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000389 Chronic otitis media 
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 HP:0000400 Large ears 
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 HP:0000411 Protruding ears 
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 HP:0000414 Bulbous nose 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000490 Deep set eyes 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
Show

 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
Show

 HP:0000717 Autism 
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 HP:0000722 Obsessive-compulsive disorder 
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 HP:0000726 Dementia 
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 HP:0000734 Disinhibition 
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 HP:0000739 Anxiety 
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 HP:0000752 Hyperactivity 
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0000771 Gynecomastia 
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 HP:0000802 Impotence 
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 HP:0000817 Poor eye contact 
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 HP:0000821 Hypothyroidism 
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0000837 Elevated gonadotropins 
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 HP:0000858 Menstrual irregularities 
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 HP:0001152 Saccadic smooth pursuit 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001272 Cerebellar atrophy 
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 HP:0001300 Parkinsonism 
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 HP:0001310 Dysmetria 
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001388 Joint laxity 
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 HP:0001417 X-linked inheritance "A mode of inheritance that is observed for traits related to a gene encoded on the X chromosome." [HPO:curators]
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 HP:0001423 X-linked dominant inheritance "A mode of inheritance that is observed for dominant traits related to a gene encoded on the X chromosome. In the context of medical genetics, X-linked dominant disorders tend to manifest very severely in affected males. The severity of manifestation in females may depend on the degree of skewed X inactivation." [HPO:curators]
Show

 HP:0001508 Failure to thrive 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001620 High pitched voice 
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 HP:0001634 Mitral valve prolapse 
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 HP:0001763 Pes planus "A condition in which the arch of the foot is flat, with the entire sole of the foot being in near-complete contact with the ground." [HPO:curators]
Show

 HP:0001773 Short, broad feet "Abnormally short and wide feet." [HPO:curators]
Show

 HP:0001939 Metabolism abnormality 
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 HP:0001956 Truncal obesity "Obesity located preferentially in the trunk of the body as opposed to the extremities." [HPO:curators]
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 HP:0002003 Large forehead 
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
Show

 HP:0002020 Gastroesophageal reflux 
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 HP:0002050 Macroorchidism, postpubertal 
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 HP:0002063 Rigidity 
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 HP:0002066 Gait ataxia "Impairment of the ability to coordinate the movements required for normal walking." [HPO:curators]
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 HP:0002067 Bradykinesia "Bradykinesia literally means slow movement, and is used clinically to denote a slowness in the execution of movement (in contrast to hypokinesia, which is used to refer to slowness in the initiation of movement)." [HPO:curators]
Show

 HP:0002075 Dysdiadochokinesis "An inability to perform rapidly alternating movements, such as rhythmically tapping the fingers on the knee, generally related to a cerebellar lesion." [HPO:curators]
Show

 HP:0002080 Intention tremor "An oscillatory cerebellar ataxia that tends to be absent when the limbs are inactive and during the first part of voluntary movement but worsening as the movement continues and greater precision is required (e.g., in touching a target such as the patient s nose or a physician s finger)." [HPO:curators]
Show

 HP:0002120 Cerebral cortical atrophy 
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 HP:0002167 Neurological speech impairment 
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 HP:0002174 Postural tremor "A type of tremors that is triggered by holding a limb in a fixed position." [HPO:curators]
Show

 HP:0002231 Sparse body hair "Sparseness of the body hair." [HPO:probinson]
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 HP:0002322 Resting tremor "A resting tremor occurs when muscles are at rest and becomes less noticeable or disappears when the affected muscles are moved. Resting tremors are often slow and coarse." [HPO:curators]
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 HP:0002342 Mental retardation, moderate "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 35-49." [HPO:curators]
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 HP:0002354 Memory impairment 
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 HP:0002363 Abnormality of the brainstem 
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 HP:0002457 Abnormal head movements 
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 HP:0002459 Dysautonomia 
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 HP:0002506 Diffuse cerebral atrophy 
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 HP:0002607 Bowel incontinence 
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 HP:0002615 Hypotension 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0002839 Sphincter disturbances (bladder) 
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 HP:0003326 Myalgia "A tendency to experience muscle pain." [HPO:curators]
Show

 HP:0003564 Folate-dependent fragile site at Xq28 
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 HP:0003581 Onset in adulthood 
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 HP:0003829 Incomplete penetrance 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0004970 Ascending aortic dilation 
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 HP:0006886 Decreased distal vibration sense "A decrease in the ability to perceive vibration in the distal portions of the limbs." [HPO:curators]
Show

 HP:0007010 Poor fine motor coordination 
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 HP:0007018 Attention deficit hyperactivity disorder "Attention deficit hyperactivity disorder (ADHD) manifests at age 2-3 years or by first grade at the latest. The main symptoms are distractibility, impulsivity, hyperactivity, and often trouble organizing tasks and projects, difficulty going to sleep, and social problems from being aggressive, loud, or impatient." [HPO:curators]
Show

 HP:0007165 Periventricular gray matter heterotopias "A form of gray matter heterotopia were the mislocalised gray matter is typically located periventricularly, also sometimes called subependymal heterotopia. Periventricular means beside the ventricles. This is by far the most common location for heterotopia. Subependymal heterotopia present in a wide array of variations. They can be a small single node or a large number of nodes, can exist on either or both sides of the brain at any point along the higher ventricle margins, can be small or large, single or multiple, and can form a small node or a large wavy or curved mass. Periventricular gray matter heterotopia can be seen for example in patients with Smith-Lemli-Opitz-Syndrome." [HPO:curators]
Show

 HP:0008209 Premature ovarian failure 
Show

 HP:0008640 Congenital macroorchidism 
Show

 HP:0008734 Decreased testicular size 
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 HP:0008770 Obsessive-compulsive trait "The presence of one or more obsessive-compulsive personality traits. Obsessions refer to persistent intrusive thoughts, and compulsions to intrusive behaviors, which the affected person experiences as involuntary, senseless, or repugnant." [HPO:curators]
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 HP:0012534 Dysesthesia "Abnormal sensations with no apparent physical cause that are painful or unpleasant." [ORCID:0000-0001-5208-3432]
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 HP:0030216 Inertia "Reduction of goal-directed behaviors linked to the impairment in frontal executive functions (planning of an action for example)." [ICM:PCaroppo]
Show

 HP:0100275 Diffuse cerebellar atrophy "Diffuse unlocalised atrophy affecting the cerebellum." [HPO:sdoelken]
Show

 HP:0100515 Pollakisuria "Increased frequency of urination." [HPO:probinson]
Show

 HP:0100716 Autoagression "Aggression towards oneself." [HPO:sdoelken]
Show

 HP:0200055 Small hands 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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