ENSGALG00000009553


Gallus gallus

Features
Gene ID: ENSGALG00000009553
  
Biological name :SMC4
  
Synonyms : SMC4 / structural maintenance of chromosomes 4
  
Possible biological names infered from orthology : Mus musculus structural maintenance of chromosomes 4 (Smc4), transcript variant 2, mRNA. / Q8CG47 / Q9NTJ3
  
Species: Gallus gallus
  
Chr. number: 9
Strand: -1
Band:
Gene start: 22249790
Gene end: 22281434
  
Corresponding Affymetrix probe sets: Gga.3200.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000050297
Ensembl peptide - ENSGALP00000032358
NCBI entrez gene - 395189     See in Manteia.
RefSeq - XM_015291635
RefSeq - XM_015291632
RefSeq - XM_015291633
RefSeq - XM_015291634
RefSeq - NM_204518
RefSeq Peptide - NP_989849
swissprot - F1NDN4
swissprot - A0A1D5PC12
Ensembl - ENSGALG00000009553
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smc4ENSDARG00000038882Danio rerio
 SMC4ENSG00000113810Homo sapiens
 Smc4ENSMUSG00000034349Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003395  RecF/RecN/SMC, N-terminal
 IPR010935  SMCs flexible hinge
 IPR024704  Structural maintenance of chromosomes protein
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007076 mitotic chromosome condensation IEA
 biological_processGO:0010032 meiotic chromosome condensation IEA
 biological_processGO:0045132 meiotic chromosome segregation IEA
 biological_processGO:0051276 chromosome organization IEA
 biological_processGO:0051383 kinetochore organization IEA
 cellular_componentGO:0000796 condensin complex IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016607 nuclear speck IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
Condensation of Prophase Chromosomes
Condensation of Prometaphase Chromosomes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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