ENSMUSG00000034349


Mus musculus

Features
Gene ID: ENSMUSG00000034349
  
Biological name :Smc4
  
Synonyms : Mus musculus structural maintenance of chromosomes 4 (Smc4), transcript variant 2, mRNA. / Q8CG47 / Smc4
  
Possible biological names infered from orthology : Q9NTJ3 / structural maintenance of chromosomes 4
  
Species: Mus musculus
  
Chr. number: 3
Strand: 1
Band: E1
Gene start: 69004738
Gene end: 69034623
  
Corresponding Affymetrix probe sets: 10492558 (MoGene1.0st)   1427275_at (Mouse Genome 430 2.0 Array)   1427276_at (Mouse Genome 430 2.0 Array)   1452197_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000103433
Ensembl peptide - ENSMUSP00000142192
Ensembl peptide - ENSMUSP00000141779
Ensembl peptide - ENSMUSP00000123350
Ensembl peptide - ENSMUSP00000115033
Ensembl peptide - ENSMUSP00000047872
NCBI entrez gene - 70099     See in Manteia.
MGI - MGI:1917349
RefSeq - XM_006502047
RefSeq - NM_001356976
RefSeq - NM_133786
RefSeq - XM_006502046
RefSeq Peptide - NP_001343905
RefSeq Peptide - NP_598547
swissprot - Q3U763
swissprot - A0A0A6YXY3
swissprot - A0A0A6YX07
swissprot - Q8CG47
swissprot - D6RCX2
swissprot - E9Q2X6
Ensembl - ENSMUSG00000034349
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smc4ENSDARG00000038882Danio rerio
 SMC4ENSGALG00000009553Gallus gallus
 SMC4ENSG00000113810Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003395  RecF/RecN/SMC, N-terminal
 IPR010935  SMCs flexible hinge
 IPR024704  Structural maintenance of chromosomes protein
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR036277  SMCs flexible hinge superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0007076 mitotic chromosome condensation IEA
 biological_processGO:0010032 meiotic chromosome condensation IMP
 biological_processGO:0030261 chromosome condensation IEA
 biological_processGO:0045132 meiotic chromosome segregation IMP
 biological_processGO:0051276 chromosome organization IEA
 biological_processGO:0051301 cell division IEA
 biological_processGO:0051383 kinetochore organization IMP
 cellular_componentGO:0000796 condensin complex IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016607 nuclear speck IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
Condensation of Prophase Chromosomes
Condensation of Prometaphase Chromosomes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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