ENSGALG00000010671


Gallus gallus

Features
Gene ID: ENSGALG00000010671
  
Biological name :HNRNPU
  
Synonyms : heterogeneous nuclear ribonucleoprotein U / HNRNPU
  
Possible biological names infered from orthology : Heteroous nuclear ribonucleoprotein U / Q00839 / Q8VEK3
  
Species: Gallus gallus
  
Chr. number: 3
Strand: 1
Band:
Gene start: 34787785
Gene end: 34799994
  
Corresponding Affymetrix probe sets: Gga.5378.1.S1_at (Chicken Array)   Gga.5378.2.A1_at (Chicken Array)   Gga.5378.2.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000017341
NCBI entrez gene - 421492     See in Manteia.
RefSeq - XM_015283991
swissprot - F1NSP8
Ensembl - ENSGALG00000010671
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hnrnpuaENSDARG00000015206Danio rerio
 hnrnpubENSDARG00000004735Danio rerio
 HNRNPUENSG00000153187Homo sapiens
 HnrnpuENSMUSG00000039630Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001870  B30.2/SPRY domain
 IPR003034  SAP domain
 IPR003877  SPRY domain
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR026745  Heterogeneous nuclear ribonucleoprotein U
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IEA
 biological_processGO:0007346 regulation of mitotic cell cycle IEA
 biological_processGO:0009048 dosage compensation by inactivation of X chromosome IEA
 biological_processGO:0032211 negative regulation of telomere maintenance via telomerase IEA
 biological_processGO:0032922 circadian regulation of gene expression IEA
 biological_processGO:0033673 negative regulation of kinase activity IEA
 biological_processGO:0034244 negative regulation of transcription elongation from RNA polymerase II promoter IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048255 mRNA stabilization IEA
 biological_processGO:0051457 maintenance of protein location in nucleus IEA
 biological_processGO:0055013 cardiac muscle cell development IEA
 biological_processGO:0070934 CRD-mediated mRNA stabilization IEA
 biological_processGO:0071385 cellular response to glucocorticoid stimulus IEA
 biological_processGO:1901673 regulation of mitotic spindle assembly IEA
 biological_processGO:1902275 regulation of chromatin organization IEA
 biological_processGO:1902425 positive regulation of attachment of mitotic spindle microtubules to kinetochore IEA
 biological_processGO:1902889 protein localization to spindle microtubule IEA
 biological_processGO:1990280 RNA localization to chromatin IEA
 biological_processGO:1990830 cellular response to leukemia inhibitory factor IEA
 biological_processGO:2000648 positive regulation of stem cell proliferation IEA
 biological_processGO:2000737 negative regulation of stem cell differentiation IEA
 cellular_componentGO:0000228 nuclear chromosome IEA
 cellular_componentGO:0000776 kinetochore IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005697 telomerase holoenzyme complex IEA
 cellular_componentGO:0005813 centrosome IEA
 cellular_componentGO:0009986 cell surface IEA
 cellular_componentGO:0016363 nuclear matrix IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0030496 midbody IEA
 cellular_componentGO:0032991 protein-containing complex IEA
 cellular_componentGO:0036464 cytoplasmic ribonucleoprotein granule IEA
 cellular_componentGO:0070937 CRD-mediated mRNA stability complex IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 cellular_componentGO:0072686 mitotic spindle IEA
 cellular_componentGO:0090575 RNA polymerase II transcription factor complex IEA
 cellular_componentGO:0098577 inactive sex chromosome IEA
 cellular_componentGO:1990023 mitotic spindle midzone IEA
 cellular_componentGO:1990498 mitotic spindle microtubule IEA
 cellular_componentGO:1990904 ribonucleoprotein complex IEA
 molecular_functionGO:0000993 RNA polymerase II core binding IEA
 molecular_functionGO:0001047 core promoter binding IEA
 molecular_functionGO:0001097 TFIIH-class transcription factor binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003690 double-stranded DNA binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding IEA
 molecular_functionGO:0003714 transcription corepressor activity IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003725 double-stranded RNA binding IEA
 molecular_functionGO:0003727 single-stranded RNA binding IEA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008143 poly(A) binding IEA
 molecular_functionGO:0017069 snRNA binding IEA
 molecular_functionGO:0017130 poly(C) RNA binding IEA
 molecular_functionGO:0031490 chromatin DNA binding IEA
 molecular_functionGO:0034046 poly(G) binding IEA
 molecular_functionGO:0036002 pre-mRNA binding IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0043021 ribonucleoprotein complex binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0044877 protein-containing complex binding IEA
 molecular_functionGO:0070034 telomerase RNA binding IEA
 molecular_functionGO:0099122 RNA polymerase II C-terminal domain binding IEA
 molecular_functionGO:1990837 sequence-specific double-stranded DNA binding IEA
 molecular_functionGO:1990841 promoter-specific chromatin binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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