ENSG00000153187


Homo sapiens

Features
Gene ID: ENSG00000153187
  
Biological name :HNRNPU
  
Synonyms : heterogeneous nuclear ribonucleoprotein U / HNRNPU / Q00839
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: q44
Gene start: 244840638
Gene end: 244864560
  
Corresponding Affymetrix probe sets: 200593_s_at (Human Genome U133 Plus 2.0 Array)   200594_x_at (Human Genome U133 Plus 2.0 Array)   216855_s_at (Human Genome U133 Plus 2.0 Array)   221639_x_at (Human Genome U133 Plus 2.0 Array)   225786_at (Human Genome U133 Plus 2.0 Array)   225805_at (Human Genome U133 Plus 2.0 Array)   235603_at (Human Genome U133 Plus 2.0 Array)   236723_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000410728
Ensembl peptide - ENSP00000393151
Ensembl peptide - ENSP00000479468
Ensembl peptide - ENSP00000492620
Ensembl peptide - ENSP00000492573
Ensembl peptide - ENSP00000492010
Ensembl peptide - ENSP00000491903
Ensembl peptide - ENSP00000491807
Ensembl peptide - ENSP00000491685
Ensembl peptide - ENSP00000491601
Ensembl peptide - ENSP00000491491
Ensembl peptide - ENSP00000491340
Ensembl peptide - ENSP00000491305
Ensembl peptide - ENSP00000491294
Ensembl peptide - ENSP00000491263
Ensembl peptide - ENSP00000491215
Ensembl peptide - ENSP00000490988
Ensembl peptide - ENSP00000482621
Ensembl peptide - ENSP00000283179
NCBI entrez gene - 3192     See in Manteia.
OMIM - 602869
RefSeq - XM_017001117
RefSeq - NM_004501
RefSeq - NM_031844
RefSeq - XM_017001115
RefSeq - XM_017001116
RefSeq Peptide - NP_114032
RefSeq Peptide - NP_004492
swissprot - A0A1W2PPS1
swissprot - A0A1W2PPL4
swissprot - A0A1W2PPH7
swissprot - A0A1W2PPE9
swissprot - A0A1W2PP35
swissprot - A0A1W2PP34
swissprot - A0A1W2PP22
swissprot - A0A1W2PNG3
swissprot - A0A087WZF3
swissprot - Q5RI18
swissprot - A0A087WVI9
swissprot - Q00839
swissprot - A0A1X7SBS1
swissprot - A0A1W2PRZ7
swissprot - A0A1W2PRI6
swissprot - A0A1W2PQD4
swissprot - A0A1W2PQL0
swissprot - A0A1W2PQ74
Ensembl - ENSG00000153187
  
Related genetic diseases (OMIM): 617391 - Epileptic encephalopathy, early infantile, 54, 617391
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hnrnpuaENSDARG00000015206Danio rerio
 hnrnpubENSDARG00000004735Danio rerio
 HNRNPUENSGALG00000010671Gallus gallus
 HnrnpuENSMUSG00000039630Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9BUJ2 / HNRNPUL1 / heterogeneous nuclear ribonucleoprotein U like 1ENSG0000010532342
Q1KMD3 / HNRNPUL2 / heterogeneous nuclear ribonucleoprotein U like 2ENSG0000021475338
HNRNPUL2-BSCL2 / HNRNPUL2-BSCL2 readthrough (NMD candidate)ENSG0000023485737


Protein motifs (from Interpro)
Interpro ID Name
 IPR001870  B30.2/SPRY domain
 IPR003034  SAP domain
 IPR003877  SPRY domain
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR026745  Heterogeneous nuclear ribonucleoprotein U
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR035778  Heterogeneous nuclear ribonucleoprotein U, SPRY domain
 IPR036361  SAP domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IMP
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IDA
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0001649 osteoblast differentiation HDA
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006396 RNA processing TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007346 regulation of mitotic cell cycle IMP
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0009048 dosage compensation by inactivation of X chromosome IEA
 biological_processGO:0016070 RNA metabolic process TAS
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0032211 negative regulation of telomere maintenance via telomerase IMP
 biological_processGO:0032922 circadian regulation of gene expression IEA
 biological_processGO:0033673 negative regulation of kinase activity IMP
 biological_processGO:0034244 negative regulation of transcription elongation from RNA polymerase II promoter IMP
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048255 mRNA stabilization IDA
 biological_processGO:0048511 rhythmic process IEA
 biological_processGO:0051301 cell division IEA
 biological_processGO:0051457 maintenance of protein location in nucleus IMP
 biological_processGO:0055013 cardiac muscle cell development IEA
 biological_processGO:0070934 CRD-mediated mRNA stabilization IMP
 biological_processGO:0071385 cellular response to glucocorticoid stimulus IDA
 biological_processGO:1901673 regulation of mitotic spindle assembly IMP
 biological_processGO:1902275 regulation of chromatin organization IMP
 biological_processGO:1902425 positive regulation of attachment of mitotic spindle microtubules to kinetochore IMP
 biological_processGO:1902889 protein localization to spindle microtubule IMP
 biological_processGO:1990280 RNA localization to chromatin IEA
 biological_processGO:1990830 cellular response to leukemia inhibitory factor IEA
 biological_processGO:2000373 positive regulation of DNA topoisomerase (ATP-hydrolyzing) activity ISS
 biological_processGO:2000648 positive regulation of stem cell proliferation IEA
 biological_processGO:2000737 negative regulation of stem cell differentiation IEA
 cellular_componentGO:0000228 nuclear chromosome IDA
 cellular_componentGO:0000775 chromosome, centromeric region IEA
 cellular_componentGO:0000776 kinetochore IEA
 cellular_componentGO:0000777 condensed chromosome kinetochore IEA
 cellular_componentGO:0000922 spindle pole IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0005697 telomerase holoenzyme complex IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005813 centrosome IDA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005819 spindle IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0009986 cell surface IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016363 nuclear matrix IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0030496 midbody IEA
 cellular_componentGO:0032991 protein-containing complex IDA
 cellular_componentGO:0036464 cytoplasmic ribonucleoprotein granule IDA
 cellular_componentGO:0070937 CRD-mediated mRNA stability complex IDA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IDA
 cellular_componentGO:0072686 mitotic spindle IDA
 cellular_componentGO:0090575 RNA polymerase II transcription factor complex IDA
 cellular_componentGO:0098577 inactive sex chromosome IDA
 cellular_componentGO:1990023 mitotic spindle midzone IDA
 cellular_componentGO:1990498 mitotic spindle microtubule IDA
 cellular_componentGO:1990904 ribonucleoprotein complex IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0000993 RNA polymerase II core binding IDA
 molecular_functionGO:0001047 core promoter binding IEA
 molecular_functionGO:0001097 TFIIH-class transcription factor binding IDA
 molecular_functionGO:0003677 DNA binding TAS
 molecular_functionGO:0003682 chromatin binding IDA
 molecular_functionGO:0003690 double-stranded DNA binding IDA
 molecular_functionGO:0003697 single-stranded DNA binding IDA
 molecular_functionGO:0003714 transcription corepressor activity IMP
 molecular_functionGO:0003723 RNA binding IPI
 molecular_functionGO:0003725 double-stranded RNA binding IDA
 molecular_functionGO:0003727 single-stranded RNA binding IDA
 molecular_functionGO:0003730 mRNA 3"-UTR binding IDA
 molecular_functionGO:0003779 actin binding IDA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008143 poly(A) binding IDA
 molecular_functionGO:0017069 snRNA binding IDA
 molecular_functionGO:0017130 poly(C) RNA binding IDA
 molecular_functionGO:0031490 chromatin DNA binding IDA
 molecular_functionGO:0034046 poly(G) binding IDA
 molecular_functionGO:0036002 pre-mRNA binding IDA
 molecular_functionGO:0042802 identical protein binding IDA
 molecular_functionGO:0043021 ribonucleoprotein complex binding IDA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0044877 protein-containing complex binding IDA
 molecular_functionGO:0070034 telomerase RNA binding IPI
 molecular_functionGO:0099122 RNA polymerase II C-terminal domain binding IEA
 molecular_functionGO:1990837 sequence-specific double-stranded DNA binding IDA
 molecular_functionGO:1990841 promoter-specific chromatin binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
Processing of Capped Intron-Containing Pre-mRNA


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000076 Vesicoureteral reflux "Abnormal (retrograde) movement of urine from the bladder into ureters or kidneys related to inadequacy of the valvular mechanism at the ureterovesicular junction or other causes." [HPO:curators]
Show

 HP:0000085 Horseshoe kidney 
Show

 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
Show

 HP:0000233 Thin vermillion border 
Show

 HP:0000238 Hydrocephalus 
Show

 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
Show

 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
Show

 HP:0000316 Hypertelorism 
Show

 HP:0000319 Flat philtrum 
Show

 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
Show

 HP:0000348 High forehead "An abnormally increased height of the forehead." [HPO:curators]
Show

 HP:0000384 Preauricular skin tag "A rudimentary tag of ear tissue often containing a core of cartilage and located just in front of the auricle (outer part of the ear)." [HPO:curators]
Show

 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
Show

 HP:0000506 Telecanthus "An abnormally increased distance between the medial canthi (angle between eyelids) of the eyelids." [HPO:curators]
Show

 HP:0000582 Upslanting palpebral fissures 
Show

 HP:0000664 Synophrys "Fusion of the left and right `eyebrow` (FMA:54237)." [HPO:probinson]
Show

 HP:0000750 Impaired language development 
Show

 HP:0001249 Mental retardation 
Show

 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
Show

 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
Show

 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
Show

 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
Show

 HP:0001671 Abnormality of the cardiac septa 
Show

 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
Show

 HP:0002069 Generalized tonic-clonic seizures "Generalized tonic-clonic seizures are `generalized seizures` (HP:0002197) in which the patient suddenly loses conciousness, the eyes roll back, and the entire body musculature undergoes tonic contractions. In the clonic phase of the seizure, there are rhythmic contractions of the musculature alternating with relaxation of all muscle groups. Loss of sphincter control during the seizure is common. This form of seizure was formerly commonly called grand mal seizure." [HPO:curators]
Show

 HP:0002119 Ventriculomegaly 
Show

 HP:0002263 Exaggerated cupid s bow upper lip 
Show

 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
Show

 HP:0002566 Intestinal malrotation "An abnormality of the intestinal rotation and fixation that normally occurs during the development of the gut. This can lead to volvulus, or twisting of the intestine that causes obstruction and necrosis." [HPO:curators]
Show

 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
Show

 HP:0003593 Early onset 
Show

 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0004422 Biparietal narrowing "A narrowing of the biparietal diameter (i.e., of the transverse distance between the protuberances of the two parietal bones of the skull)." [HPO:curators]
Show

 HP:0005487 Prominent metopic suture "A prominent persistent frontal suture (metopic suture)." [HPO:curators]
Show

 HP:0007766 Hypoplastic optic disks 
Show

 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
Show

 HP:0012448 Delayed myelination "`Delayed` (PATO:0000502) `myelination` (GO:0042552)." [ORCID:0000-0001-5208-3432]
Show

 HP:0200134 Epileptic encephalopathy 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr