ENSDARG00000004735


Danio rerio

Features
Gene ID: ENSDARG00000004735
  
Biological name :hnrnpub
  
Synonyms : heterogeneous nuclear ribonucleoprotein Ub / hnrnpub
  
Possible biological names infered from orthology : heterogeneous nuclear ribonucleoprotein U / Heteroous nuclear ribonucleoprotein U / HNRNPU / Q00839 / Q8VEK3
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 35058634
Gene end: 35070476
  
Corresponding Affymetrix probe sets: Dr.25822.2.A1_at (Zebrafish Array)   Dr.25822.3.S1_at (Zebrafish Array)   Dr.4412.18.A1_at (Zebrafish Array)   NM_001033595_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000112099
NCBI entrez gene - 334490     See in Manteia.
RefSeq - NM_001033595
RefSeq Peptide - NP_001028767
swissprot - Q5RHQ7
ZFIN ID - ZDB-GENE-030131-6422
Ensembl - ENSDARG00000004735
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HNRNPUENSGALG00000010671Gallus gallus
 HNRNPUENSG00000153187Homo sapiens
 HnrnpuENSMUSG00000039630Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hnrnpua / heterogeneous nuclear ribonucleoprotein Ua / Q8VEK3* / HNRNPU* / Q00839* / Heteroous nuclear ribonucleoprotein U * / heterogeneous nuclear ribonucleoprotein U*ENSDARG0000001520656
hnrnpul1l / heterogeneous nuclear ribonucleoprotein U-like 1 like / Q9BUJ2* / HNRNPUL1* / heterogeneous nuclear ribonucleoprotein U like 1*ENSDARG0000007978040
hnrnpul1 / heterogeneous nuclear ribonucleoprotein U-like 1 / Q8VDM6* / Q9BUJ2* / Heteroous nuclear ribonucleoprotein U-like protein 1 *ENSDARG0000004056439
si:ch211-107m4.1 / Q00PI9* / Q1KMD3* / HNRNPUL2* / HNRNPUL2-BSCL2* / HNRNPUL2-BSCL2 readthrough (NMD candidate)* / heterogeneous nuclear ribonucleoprotein U like 2* / Heteroous nuclear ribo...ENSDARG0000005683029


Protein motifs (from Interpro)
Interpro ID Name
 IPR001870  B30.2/SPRY domain
 IPR003034  SAP domain
 IPR003877  SPRY domain
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005634 nucleus IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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