ENSGALG00000010840


Gallus gallus

Features
Gene ID: ENSGALG00000010840
  
Biological name :SNX13
  
Synonyms : SNX13 / sorting nexin 13
  
Possible biological names infered from orthology : Q9Y5W8
  
Species: Gallus gallus
  
Chr. number: 2
Strand: -1
Band:
Gene start: 29049123
Gene end: 29109429
  
Corresponding Affymetrix probe sets: Gga.18829.1.S1_at (Chicken Array)   Gga.20077.1.S1_at (Chicken Array)   GgaAffx.11431.1.S1_at (Chicken Array)   GgaAffx.23342.1.S1_at (Chicken Array)   GgaAffx.23342.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000017600
Ensembl peptide - ENSGALP00000049799
Ensembl peptide - ENSGALP00000037114
NCBI entrez gene - 420598     See in Manteia.
RefSeq - XM_015281420
RefSeq - XM_015281415
RefSeq - XM_015281416
RefSeq - XM_015281417
RefSeq - XM_015281418
RefSeq - NM_001109755
RefSeq - XM_015281412
RefSeq - XM_015281413
RefSeq - XM_015281414
RefSeq Peptide - NP_001103225
swissprot - E1C7R8
swissprot - E1BZM0
swissprot - A0A1D5PAN6
Ensembl - ENSGALG00000010840
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snx13ENSDARG00000013828Danio rerio
 SNX13ENSG00000071189Homo sapiens
 Snx13ENSMUSG00000020590Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SNX14 / sorting nexin-14 / Q8BHY8* / Q9Y5W7*ENSGALG0000001583117
SNX25 / sorting nexin 25 / Q3ZT31* / Q9H3E2*ENSGALG0000001061016


Protein motifs (from Interpro)
Interpro ID Name
 IPR001683  Phox homologous domain
 IPR003114  Phox-associated domain
 IPR013937  Sorting nexin, C-terminal
 IPR016137  RGS domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0043547 positive regulation of GTPase activity IEA
 cellular_componentGO:0005769 early endosome IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0032266 phosphatidylinositol-3-phosphate binding IEA
 molecular_functionGO:0035091 phosphatidylinositol binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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