ENSG00000071189


Homo sapiens

Features
Gene ID: ENSG00000071189
  
Biological name :SNX13
  
Synonyms : Q9Y5W8 / SNX13 / sorting nexin 13
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: -1
Band: p21.1
Gene start: 17790761
Gene end: 17940501
  
Corresponding Affymetrix probe sets: 1553148_a_at (Human Genome U133 Plus 2.0 Array)   213292_s_at (Human Genome U133 Plus 2.0 Array)   215366_at (Human Genome U133 Plus 2.0 Array)   215820_x_at (Human Genome U133 Plus 2.0 Array)   227031_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000479044
Ensembl peptide - ENSP00000387053
Ensembl peptide - ENSP00000397768
Ensembl peptide - ENSP00000398789
Ensembl peptide - ENSP00000386639
NCBI entrez gene - 23161     See in Manteia.
OMIM - 606589
RefSeq - XM_017011897
RefSeq - XM_005249672
RefSeq - XM_011515229
RefSeq - XM_011515230
RefSeq - XM_011515231
RefSeq - XM_011515233
RefSeq - XM_017011893
RefSeq - XM_017011894
RefSeq - XM_017011895
RefSeq - XM_017011896
RefSeq - NM_001350863
RefSeq - NM_001350870
RefSeq - NM_015132
RefSeq Peptide - NP_001337792
RefSeq Peptide - NP_001337799
RefSeq Peptide - NP_055947
swissprot - Q9NSH0
swissprot - A0A087WUZ7
swissprot - A0A024R9Z9
swissprot - Q9Y5W8
swissprot - F8W8A9
swissprot - F8WB11
Ensembl - ENSG00000071189
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snx13ENSDARG00000013828Danio rerio
 SNX13ENSGALG00000010840Gallus gallus
 Snx13ENSMUSG00000020590Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SNX25 / Q9H3E2 / sorting nexin 25ENSG0000010976222
SNX14 / Q9Y5W7 / sorting nexin 14ENSG0000013531719


Protein motifs (from Interpro)
Interpro ID Name
 IPR001683  Phox homologous domain
 IPR003114  Phox-associated domain
 IPR013937  Sorting nexin, C-terminal
 IPR016137  RGS domain
 IPR036305  RGS domain superfamily
 IPR036871  PX domain superfamily
 IPR037437  Sorting nexin-13, PX domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IMP
 biological_processGO:0009968 negative regulation of signal transduction IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0043547 positive regulation of GTPase activity IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005769 early endosome IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031901 early endosome membrane IEA
 molecular_functionGO:0008289 lipid binding IEA
 molecular_functionGO:0032266 phosphatidylinositol-3-phosphate binding IDA
 molecular_functionGO:0035091 phosphatidylinositol binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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