ENSDARG00000013828


Danio rerio

Features
Gene ID: ENSDARG00000013828
  
Biological name :snx13
  
Synonyms : snx13 / sorting nexin 13
  
Possible biological names infered from orthology : Q9Y5W8
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 2064173
Gene end: 2115040
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000021266
Ensembl peptide - ENSDARP00000063614
NCBI entrez gene - 503733     See in Manteia.
swissprot - F1QM62
swissprot - Q5CZT6
ZFIN ID - ZDB-GENE-050306-12
Ensembl - ENSDARG00000013828
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNX13ENSGALG00000010840Gallus gallus
 SNX13ENSG00000071189Homo sapiens
 Snx13ENSMUSG00000020590Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
snx25 / sorting nexin 25 / Q3ZT31* / Q9H3E2*ENSDARG0000009954523
snx14 / Q5PNP1 / sorting nexin 14 / Q8BHY8* / Q9Y5W7*ENSDARG0000000633217


Protein motifs (from Interpro)
Interpro ID Name
 IPR001683  Phox homologous domain
 IPR003114  Phox-associated domain
 IPR013937  Sorting nexin, C-terminal
 IPR016137  RGS domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010667 negative regulation of cardiac muscle cell apoptotic process IMP
 biological_processGO:2001237 negative regulation of extrinsic apoptotic signaling pathway IMP
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0035091 phosphatidylinositol binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000007 blood blood accumulation atrium , abnormal
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 ZFA:0000009 cardiac ventricle cardiac ventricle dilated , abnormal
cardiac ventricle cardiac muscle cell degenerate , abnormal
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 ZFA:0000114 heart heart decreased functionality , abnormal
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 ZFA:0000471 atrium atrium dilated , abnormal
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 ZFA:0009316 cardiac muscle cell cardiac muscle cell apoptotic , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr