ENSGALG00000011506


Gallus gallus

Features
Gene ID: ENSGALG00000011506
  
Biological name :NUP54
  
Synonyms : nucleoporin 54 / NUP54
  
Possible biological names infered from orthology : Nuclear pore complex protein Nup54 / Q7Z3B4 / Q8BTS4
  
Species: Gallus gallus
  
Chr. number: 4
Strand: 1
Band:
Gene start: 50271206
Gene end: 50282689
  
Corresponding Affymetrix probe sets: GgaAffx.23576.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000018737
Ensembl peptide - ENSGALP00000062995
Ensembl peptide - ENSGALP00000061053
NCBI entrez gene - 422639     See in Manteia.
RefSeq - XM_015276423
RefSeq - XM_015276424
swissprot - A0A1L1RVY5
swissprot - A0A1L1RQI3
swissprot - F1NZ34
Ensembl - ENSGALG00000011506
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CZQB01146713.1ENSDARG00000111699Danio rerio
 nup54ENSDARG00000103296Danio rerio
 NUP54ENSG00000138750Homo sapiens
 Nup54ENSMUSG00000034826Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR024864  Nucleoporin Nup54/Nup57/Nup44
 IPR025712  Nucleoporin Nup54, alpha-helical domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006607 NLS-bearing protein import into nucleus IBA
 biological_processGO:0006999 nuclear pore organization IBA
 biological_processGO:0036228 protein localization to nuclear inner membrane IBA
 cellular_componentGO:0005643 nuclear pore IEA
 cellular_componentGO:0044613 nuclear pore central transport channel IBA
 molecular_functionGO:0017056 structural constituent of nuclear pore IBA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
snRNP Assembly
SUMOylation of DNA damage response and repair proteins
SUMOylation of ubiquitinylation proteins
Nuclear Pore Complex (NPC) Disassembly
SUMOylation of SUMOylation proteins
SUMOylation of chromatin organization proteins
SUMOylation of DNA replication proteins
Transcriptional regulation by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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