ENSDARG00000103296


Danio rerio

Features
Gene ID: ENSDARG00000103296
  
Biological name :nup54
  
Synonyms : nucleoporin 54 / nup54
  
Possible biological names infered from orthology : Nuclear pore complex protein Nup54 / Q7Z3B4 / Q8BTS4
  
Species: Danio rerio
  
Chr. number: 21
Strand: -1
Band:
Gene start: 216440
Gene end: 226071
  
Corresponding Affymetrix probe sets: Dr.3518.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000130940
NCBI entrez gene - 335750     See in Manteia.
swissprot - E7FEX4
swissprot - Q6NYN9
ZFIN ID - ZDB-GENE-040426-2263
Ensembl - ENSDARG00000103296
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NUP54ENSGALG00000011506Gallus gallus
 NUP54ENSG00000138750Homo sapiens
 Nup54ENSMUSG00000034826Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CZQB01146713.1 / NUP54* / Q7Z3B4* / nucleoporin 54*ENSDARG000001116991


Protein motifs (from Interpro)
Interpro ID Name
 IPR024864  Nucleoporin Nup54/Nup57/Nup44


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001889 liver development IMP
 biological_processGO:0006607 NLS-bearing protein import into nucleus IBA
 biological_processGO:0006999 nuclear pore organization IBA
 biological_processGO:0007507 heart development IMP
 biological_processGO:0009953 dorsal/ventral pattern formation IMP
 biological_processGO:0031017 exocrine pancreas development IMP
 biological_processGO:0036228 protein localization to nuclear inner membrane IBA
 biological_processGO:0048565 digestive tract development IMP
 cellular_componentGO:0005643 nuclear pore IEA
 cellular_componentGO:0044613 nuclear pore central transport channel IBA
 molecular_functionGO:0017056 structural constituent of nuclear pore IBA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
Regulation of Glucokinase by Glucokinase Regulatory Protein
snRNP Assembly
SUMOylation of DNA damage response and repair proteins
SUMOylation of ubiquitinylation proteins
Nuclear Pore Complex (NPC) Disassembly
SUMOylation of SUMOylation proteins
SUMOylation of chromatin organization proteins
SUMOylation of RNA binding proteins
Transcriptional regulation by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism wholly ventralized , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000103296 nup54 / nucleoporin 54 / Q7Z3B4*  / complex
 ENSDARG00000020527 nup62l / nucleoporin 62 like / NUP62* / P37198* / Q63850* / nucleoporin 62* / Nuclear pore glycoprotein p62 *  / complex






 

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