ENSDARG00000020527


Danio rerio

Features
Gene ID: ENSDARG00000020527
  
Biological name :nup62l
  
Synonyms : nucleoporin 62 like / nup62l
  
Possible biological names infered from orthology : Nuclear pore glycoprotein p62 / nucleoporin 62 / NUP62 / P37198 / Q63850
  
Species: Danio rerio
  
Chr. number: 14
Strand: 1
Band:
Gene start: 10624911
Gene end: 10656211
  
Corresponding Affymetrix probe sets: Dr.20267.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000113639
Ensembl peptide - ENSDARP00000134308
Ensembl peptide - ENSDARP00000121166
NCBI entrez gene - 563392     See in Manteia.
swissprot - E9QIQ3
swissprot - E9QEC4
swissprot - A0A0R4IG74
ZFIN ID - ZDB-GENE-030131-8491
Ensembl - ENSDARG00000020527
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000004856Gallus gallus
 NUP62ENSG00000213024Homo sapiens
 Nup62ENSMUSG00000109511Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007758  Nucleoporin, NSP1-like, C-terminal
 IPR026010  Nucleoporin NSP1/NUP62
 IPR033072  Nuclear pore glycoprotein p62, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001889 liver development IMP
 biological_processGO:0006606 protein import into nucleus IDA
 biological_processGO:0007507 heart development IMP
 biological_processGO:0009953 dorsal/ventral pattern formation IMP
 biological_processGO:0030514 negative regulation of BMP signaling pathway IMP
 biological_processGO:0031017 exocrine pancreas development IMP
 biological_processGO:0048565 digestive tract development IMP
 biological_processGO:0051169 nuclear transport IEA
 biological_processGO:0060026 convergent extension IMP
 biological_processGO:0071426 ribonucleoprotein complex export from nucleus IBA
 biological_processGO:0090263 positive regulation of canonical Wnt signaling pathway IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005643 nuclear pore IEA
 cellular_componentGO:0044613 nuclear pore central transport channel IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005543 phospholipid binding IBA
 molecular_functionGO:0017056 structural constituent of nuclear pore IBA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
Regulation of Glucokinase by Glucokinase Regulatory Protein
snRNP Assembly
SUMOylation of DNA damage response and repair proteins
SUMOylation of ubiquitinylation proteins
Nuclear Pore Complex (NPC) Disassembly
SUMOylation of SUMOylation proteins
SUMOylation of chromatin organization proteins
SUMOylation of RNA binding proteins
Transcriptional regulation by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000092 axis axis distended , abnormal
Show

 ZFA:0000135 notochord notochord morphology , abnormal
notochord increased width , abnormal
Show

 ZFA:0000155 somite somite increased size , abnormal
Show

 ZFA:0001094 whole organism whole organism wholly ventralized , abnormal
whole organism ventral region increased thickness , abnormal
Show

 ZFA:0001114 head head hypoplastic , abnormal
head aplastic , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000020527 nup62l / nucleoporin 62 like / NUP62* / P37198* / Q63850* / nucleoporin 62* / Nuclear pore glycoprotein p62 *  / complex
 ENSDARG00000103296 nup54 / nucleoporin 54 / Q7Z3B4*  / complex






 

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