ENSGALG00000004856


Gallus gallus

Features
Gene ID: ENSGALG00000004856
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology : Nuclear pore glycoprotein p62 / nucleoporin 62 / NUP62 / P37198 / Q63850
  
Species: Gallus gallus
  
Chr. number: 4
Strand: -1
Band:
Gene start: 1910968
Gene end: 1919310
  
Corresponding Affymetrix probe sets: Gga.8158.1.S1_at (Chicken Array)   Gga.8158.2.S1_at (Chicken Array)   Gga.8158.3.S1_at (Chicken Array)   GgaAffx.3014.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000007743
NCBI entrez gene - 422183     See in Manteia.
RefSeq - XM_420179
swissprot - F1NFA8
Ensembl - ENSGALG00000004856
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nup62lENSDARG00000020527Danio rerio
 NUP62ENSG00000213024Homo sapiens
 Nup62ENSMUSG00000109511Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007758  Nucleoporin, NSP1-like, C-terminal
 IPR026010  Nucleoporin NSP1/NUP62
 IPR033072  Nuclear pore glycoprotein p62, metazoa


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006606 protein import into nucleus IBA
 biological_processGO:0051169 nuclear transport IEA
 biological_processGO:0071426 ribonucleoprotein complex export from nucleus IBA
 cellular_componentGO:0005643 nuclear pore IEA
 cellular_componentGO:0044613 nuclear pore central transport channel IBA
 molecular_functionGO:0005543 phospholipid binding IBA
 molecular_functionGO:0017056 structural constituent of nuclear pore IBA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
snRNP Assembly
SUMOylation of DNA damage response and repair proteins
SUMOylation of ubiquitinylation proteins
Nuclear Pore Complex (NPC) Disassembly
SUMOylation of SUMOylation proteins
SUMOylation of chromatin organization proteins
SUMOylation of DNA replication proteins
Transcriptional regulation by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000004856 NUP62* / P37198* / Q63850* / nucleoporin 62* / Nuclear pore glycoprotein p62 *  / complex
 ENSGALG00000017111 NUP58 / nucleoporin 58 / Nupl1* / Q8R332* / Q9BVL2* / Nucleoporin p58/p45 *  / complex






 

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contact: otassy@igbmc.fr