ENSMUSG00000034826


Mus musculus

Features
Gene ID: ENSMUSG00000034826
  
Biological name :Nup54
  
Synonyms : Nuclear pore complex protein Nup54 / Nup54 / Q8BTS4
  
Possible biological names infered from orthology : nucleoporin 54 / Q7Z3B4
  
Species: Mus musculus
  
Chr. number: 5
Strand: -1
Band: E2
Gene start: 92415540
Gene end: 92435219
  
Corresponding Affymetrix probe sets: 10531428 (MoGene1.0st)   1432539_a_at (Mouse Genome 430 2.0 Array)   1433580_at (Mouse Genome 430 2.0 Array)   1438951_x_at (Mouse Genome 430 2.0 Array)   1447253_x_at (Mouse Genome 430 2.0 Array)   1459651_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000120937
Ensembl peptide - ENSMUSP00000121171
Ensembl peptide - ENSMUSP00000046540
Ensembl peptide - ENSMUSP00000117237
NCBI entrez gene - 269113     See in Manteia.
MGI - MGI:1920460
RefSeq - XM_006534956
RefSeq - XM_006534958
RefSeq - XM_006534959
RefSeq - XM_017320895
RefSeq - NM_183392
RefSeq Peptide - NP_899248
swissprot - Q8BTS4
swissprot - F6UKR5
swissprot - D3Z5F5
swissprot - D6RFN7
Ensembl - ENSMUSG00000034826
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CZQB01146713.1ENSDARG00000111699Danio rerio
 nup54ENSDARG00000103296Danio rerio
 NUP54ENSGALG00000011506Gallus gallus
 NUP54ENSG00000138750Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR024864  Nucleoporin Nup54/Nup57/Nup44
 IPR025712  Nucleoporin Nup54, alpha-helical domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006605 protein targeting IEA
 biological_processGO:0006607 NLS-bearing protein import into nucleus IBA
 biological_processGO:0006913 nucleocytoplasmic transport IEA
 biological_processGO:0006999 nuclear pore organization IBA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0036228 protein localization to nuclear inner membrane IBA
 biological_processGO:0042306 regulation of protein import into nucleus IEA
 biological_processGO:0051028 mRNA transport IEA
 biological_processGO:0051260 protein homooligomerization IEA
 biological_processGO:0051290 protein heterotetramerization IEA
 biological_processGO:0051291 protein heterooligomerization IEA
 biological_processGO:0070208 protein heterotrimerization IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005635 nuclear envelope IEA
 cellular_componentGO:0005643 nuclear pore IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031965 nuclear membrane IEA
 cellular_componentGO:0044613 nuclear pore central transport channel IBA
 molecular_functionGO:0017056 structural constituent of nuclear pore IEA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
Regulation of Glucokinase by Glucokinase Regulatory Protein
snRNP Assembly
SUMOylation of DNA damage response and repair proteins
SUMOylation of ubiquitinylation proteins
Nuclear Pore Complex (NPC) Disassembly
Regulation of HSF1-mediated heat shock response
SUMOylation of SUMOylation proteins
SUMOylation of chromatin organization proteins
SUMOylation of RNA binding proteins
SUMOylation of DNA replication proteins
Transcriptional regulation by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000034826 Nup54 / Q8BTS4 / Nuclear pore complex protein Nup54 / Q7Z3B4* / nucleoporin 54*  / complex
 ENSMUSG00000114797 Nupl1 / Q8R332 / Nucleoporin p58/p45 / NUP58* / Q9BVL2* / nucleoporin 58*  / complex
 ENSMUSG00000109511 Nup62 / Q63850 / Nuclear pore glycoprotein p62 / P37198* / nucleoporin 62*  / complex






 

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