ENSGALG00000012655


Gallus gallus

Features
Gene ID: ENSGALG00000012655
  
Biological name :POLR3B
  
Synonyms : Gallus gallus RNA polymerase III subunit B (POLR3B), mRNA. / POLR3B
  
Possible biological names infered from orthology : DNA-directed RNA polymerase III subunit RPC2 / P59470 / Q9NW08 / RNA polymerase III subunit B
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 53861738
Gene end: 53929245
  
Corresponding Affymetrix probe sets: Gga.11068.1.S1_s_at (Chicken Array)   GgaAffx.23964.2.S1_s_at (Chicken Array)   GgaAffx.23964.7.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000020620
NCBI entrez gene - 418071     See in Manteia.
RefSeq - NM_001321490
RefSeq - XM_416307
RefSeq Peptide - NP_001308419
swissprot - E1BRJ4
Ensembl - ENSGALG00000012655
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 polr3bENSDARG00000062915Danio rerio
 POLR3BENSG00000013503Homo sapiens
 P59470ENSMUSG00000034453Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
POLR2B / DNA-directed RNA polymerase II subunit RPB2 / P30876* / Q8CFI7* / RNA polymerase II subunit B*ENSGALG0000001138739


Protein motifs (from Interpro)
Interpro ID Name
 IPR007120  DNA-directed RNA polymerase, subunit 2, hybrid-binding domain
 IPR007121  RNA polymerase, beta subunit, conserved site
 IPR007641  RNA polymerase Rpb2, domain 7
 IPR007642  RNA polymerase Rpb2, domain 2
 IPR007644  RNA polymerase, beta subunit, protrusion
 IPR007645  RNA polymerase Rpb2, domain 3
 IPR007646  RNA polymerase Rpb2, domain 4
 IPR007647  RNA polymerase Rpb2, domain 5
 IPR014724  RNA polymerase Rpb2, OB-fold
 IPR015712  DNA-directed RNA polymerase, subunit 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006383 transcription by RNA polymerase III IEA
 biological_processGO:0032728 positive regulation of interferon-beta production IEA
 biological_processGO:0045089 positive regulation of innate immune response IEA
 cellular_componentGO:0005666 DNA-directed RNA polymerase III complex IEA
 molecular_functionGO:0001056 RNA polymerase III activity IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003899 DNA-directed 5"-3" RNA polymerase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016779 nucleotidyltransferase activity IEA
 molecular_functionGO:0032549 ribonucleoside binding IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase III Transcription Initiation From Type 1 Promoter
RNA Polymerase III Transcription Initiation From Type 2 Promoter
RNA Polymerase III Transcription Initiation From Type 3 Promoter


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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