ENSGALG00000012685


Gallus gallus

Features
Gene ID: ENSGALG00000012685
  
Biological name :KDM1B
  
Synonyms : KDM1B / lysine demethylase 1B
  
Possible biological names infered from orthology : Lysine-specific histone demethylase 1B / Q8CIG3 / Q8NB78
  
Species: Gallus gallus
  
Chr. number: 2
Strand: -1
Band:
Gene start: 60547020
Gene end: 60573397
  
Corresponding Affymetrix probe sets: Gga.10209.1.A1_at (Chicken Array)   GgaAffx.23979.3.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000020669
NCBI entrez gene - 420829     See in Manteia.
RefSeq - XM_015275951
swissprot - E1BRG3
Ensembl - ENSGALG00000012685
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 KDM1BENSG00000165097Homo sapiens
 Kdm1bENSMUSG00000038080Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
KDM1A / lysine demethylase 1A / O60341* / Q6ZQ88* / Mus musculus lysine (K)-specific demethylase 1A (Kdm1a), transcript variant 3, mRNA.*ENSGALG0000003346927
SMOX / spermine oxidase / Q99K82* / Q9NWM0*ENSGALG0000001597715
PAOX / polyamine oxidase / Q6QHF9* / Q8C0L6* / Mus musculus polyamine oxidase (exo-N4-amino) (Paox), transcript variant 2, mRNA.*ENSGALG0000000355714


Protein motifs (from Interpro)
Interpro ID Name
 IPR002937  Amine oxidase
 IPR007526  SWIRM domain
 IPR009057  Homeobox-like domain superfamily
 IPR011124  Zinc finger, CW-type
 IPR011991  ArsR-like helix-turn-helix domain
 IPR023753  FAD/NAD(P)-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006349 regulation of gene expression by genetic imprinting IEA
 biological_processGO:0034720 histone H3-K4 demethylation IEA
 biological_processGO:0043046 DNA methylation involved in gamete generation IEA
 biological_processGO:0044030 regulation of DNA methylation IEA
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0000786 nucleosome IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0034648 histone demethylase activity (H3-dimethyl-K4 specific) IEA
 molecular_functionGO:0034649 histone demethylase activity (H3-monomethyl-K4 specific) IEA
 molecular_functionGO:0042393 histone binding IEA
 molecular_functionGO:0050660 flavin adenine dinucleotide binding IEA
 molecular_functionGO:0071949 FAD binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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