ENSGALG00000015540


Gallus gallus

Features
Gene ID: ENSGALG00000015540
  
Biological name :RAD23B
  
Synonyms : RAD23B / RAD23 homolog B, nucleotide excision repair protein
  
Possible biological names infered from orthology : P54727 / P54728 / UV excision repair B
  
Species: Gallus gallus
  
Chr. number: Z
Strand: 1
Band:
Gene start: 55628875
Gene end: 55660698
  
Corresponding Affymetrix probe sets: Gga.1359.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000025005
NCBI entrez gene - 431623     See in Manteia.
RefSeq - XM_015280519
RefSeq - XM_429175
swissprot - F1N9B7
Ensembl - ENSGALG00000015540
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rad23bENSDARG00000021550Danio rerio
 P54727ENSG00000119318Homo sapiens
 P54728ENSMUSG00000028426Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RAD23A / RAD23 homolog A, nucleotide excision repair protein / P54725* / P54726*ENSGALG0000003353252


Protein motifs (from Interpro)
Interpro ID Name
 IPR000626  Ubiquitin domain
 IPR004806  UV excision repair protein Rad23
 IPR006636  Heat shock chaperonin-binding
 IPR009060  UBA-like superfamily
 IPR015360  XPC-binding domain
 IPR015940  Ubiquitin-associated domain
 IPR029071  Ubiquitin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000715 nucleotide-excision repair, DNA damage recognition IEA
 biological_processGO:0006289 nucleotide-excision repair IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0032434 regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0071942 XPC complex IEA
 molecular_functionGO:0003684 damaged DNA binding IEA
 molecular_functionGO:0031593 polyubiquitin modification-dependent protein binding IEA


Pathways (from Reactome)
Pathway description
N-glycan trimming in the ER and Calnexin/Calreticulin cycle
Josephin domain DUBs
DNA Damage Recognition in GG-NER
Formation of Incision Complex in GG-NER


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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