ENSGALG00000016444


Gallus gallus

Features
Gene ID: ENSGALG00000016444
  
Biological name :ODC1
  
Synonyms : ODC1 / ornithine decarboxylase 1
  
Possible biological names infered from orthology : ornithine decarboxylase, structural 1 / P00860 / P11926
  
Species: Gallus gallus
  
Chr. number: 3
Strand: -1
Band:
Gene start: 97207233
Gene end: 97215296
  
Corresponding Affymetrix probe sets: Gga.4340.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000026476
NCBI entrez gene - 421937     See in Manteia.
RefSeq - NM_001167766
RefSeq - XM_015276041
RefSeq - XM_015276042
RefSeq Peptide - NP_001161238
swissprot - F1NKA3
Ensembl - ENSGALG00000016444
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 odc1ENSDARG00000007377Danio rerio
 ODC1ENSG00000115758Homo sapiens
 Odc1ENSMUSG00000011179Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AZIN2 / antizyme inhibitor 2 / Q8BVM4* / Q96A70*ENSGALG0000000361448
AZIN1 / antizyme inhibitor 1 / O14977* / O35484*ENSGALG0000002929547


Protein motifs (from Interpro)
Interpro ID Name
 IPR000183  Ornithine/DAP/Arg decarboxylase
 IPR002433  Ornithine decarboxylase
 IPR009006  Alanine racemase/group IV decarboxylase, C-terminal
 IPR022643  Orn/DAP/Arg decarboxylase 2, C-terminal
 IPR022644  Orn/DAP/Arg decarboxylase 2, N-terminal
 IPR022653  Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site
 IPR022657  Orn/DAP/Arg decarboxylase 2, conserved site
 IPR029066  PLP-binding barrel


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001822 kidney development IEA
 biological_processGO:0006596 polyamine biosynthetic process IEA
 biological_processGO:0008284 positive regulation of cell proliferation IEA
 biological_processGO:0009615 response to virus IEA
 biological_processGO:0033387 putrescine biosynthetic process from ornithine IEA
 biological_processGO:0042176 regulation of protein catabolic process IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004586 ornithine decarboxylase activity IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA


Pathways (from Reactome)
Pathway description
Regulation of ornithine decarboxylase (ODC)
Metabolism of polyamines


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000029295 AZIN1 / antizyme inhibitor 1 / O14977* / O35484*  / reaction / complex
 ENSGALG00000023437 NQO1 / NAD(P)H dehydrogenase / P15559* / Q64669* / NAD(P)H quinone dehydrogenase 1* / NAD(P)H dehydrogenase [quinone] 1 *  / reaction / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr