ENSGALG00000016467


Gallus gallus

Features
Gene ID: ENSGALG00000016467
  
Biological name :SMC6
  
Synonyms : Gallus gallus structural maintenance of chromosomes 6 (SMC6), mRNA. / SMC6
  
Possible biological names infered from orthology : Q924W5 / Q96SB8 / structural maintenance of chromosomes 6 / Structural maintenance of chromosomes protein 6
  
Species: Gallus gallus
  
Chr. number: 3
Strand: -1
Band:
Gene start: 100594888
Gene end: 100629358
  
Corresponding Affymetrix probe sets: Gga.11111.1.S1_a_at (Chicken Array)   Gga.11111.1.S1_s_at (Chicken Array)   Gga.16992.1.S1_at (Chicken Array)   Gga.18837.1.S1_at (Chicken Array)   GgaAffx.24967.1.S1_at (Chicken Array)   GgaAffx.24967.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000026518
NCBI entrez gene - 421950     See in Manteia.
RefSeq - NM_001321614
RefSeq - XM_419962
RefSeq Peptide - NP_001308543
swissprot - E1BWW3
Ensembl - ENSGALG00000016467
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smc6ENSDARG00000091821Danio rerio
 SMC6ENSG00000163029Homo sapiens
 Smc6ENSMUSG00000020608Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003395  RecF/RecN/SMC, N-terminal
 IPR027132  Structural maintenance of chromosomes protein 6
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000722 telomere maintenance via recombination IEA
 biological_processGO:0000724 double-strand break repair via homologous recombination IEA
 biological_processGO:0006281 DNA repair IEA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0051984 positive regulation of chromosome segregation IEA
 biological_processGO:0090398 cellular senescence IEA
 cellular_componentGO:0000781 chromosome, telomeric region IEA
 cellular_componentGO:0000803 sex chromosome IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0016605 PML body IEA
 cellular_componentGO:0030915 Smc5-Smc6 complex IEA
 cellular_componentGO:0035061 interchromatin granule IEA
 cellular_componentGO:0035861 site of double-strand break IEA
 molecular_functionGO:0031625 ubiquitin protein ligase binding IEA


Pathways (from Reactome)
Pathway description
SUMOylation of DNA damage response and repair proteins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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