ENSGALG00000016633


Gallus gallus

Features
Gene ID: ENSGALG00000016633
  
Biological name :HMBOX1
  
Synonyms : HMBOX1 / homeobox-containing protein 1
  
Possible biological names infered from orthology : homeobox containing 1 / Mus musculus homeobox containing 1 (Hmbox1), transcript variant 3, mRNA. / Q6NT76 / Q8BJA3
  
Species: Gallus gallus
  
Chr. number: 3
Strand: 1
Band:
Gene start: 106598559
Gene end: 106657893
  
Corresponding Affymetrix probe sets: Gga.11820.1.S1_at (Chicken Array)   Gga.19284.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000026801
NCBI entrez gene - 422024     See in Manteia.
RefSeq - XM_015285128
RefSeq - NM_001277716
RefSeq - XM_015285125
RefSeq - XM_015285126
RefSeq - XM_015285111
RefSeq - XM_015285112
RefSeq - XM_015285113
RefSeq - XM_015285114
RefSeq - XM_015285115
RefSeq - XM_015285116
RefSeq - XM_015285117
RefSeq - XM_015285118
RefSeq - XM_015285119
RefSeq - XM_015285120
RefSeq - XM_015285121
RefSeq - XM_015285122
RefSeq - XM_015285123
RefSeq - XM_015285124
RefSeq Peptide - NP_001264645
swissprot - E1BZ53
Ensembl - ENSGALG00000016633
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CABZ01078261.1ENSDARG00000109287Danio rerio
 hmbox1aENSDARG00000027082Danio rerio
 HMBOX1ENSG00000147421Homo sapiens
 Hmbox1ENSMUSG00000021972Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HNF1B / HNF1 homeobox B / P27889* / P35680* / Hepatocyte nuclear factor 1-beta *ENSGALG0000000550421
HNF1A / HNF1 homeobox A / P20823* / P22361* / Hepatocyte nuclear factor 1-alpha *ENSGALG0000000696820


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR006899  Hepatocyte nuclear factor 1, N-terminal
 IPR009057  Homeobox-like domain superfamily
 IPR010982  Lambda repressor-like, DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006278 RNA-dependent DNA biosynthetic process IEA
 biological_processGO:0032212 positive regulation of telomere maintenance via telomerase IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0051973 positive regulation of telomerase activity IEA
 cellular_componentGO:0000784 nuclear chromosome, telomeric region IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005697 telomerase holoenzyme complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016604 nuclear body IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003691 double-stranded telomeric DNA binding IEA
 molecular_functionGO:0003720 telomerase activity IEA
 molecular_functionGO:0042162 telomeric DNA binding IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0044877 protein-containing complex binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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