ENSGALG00000017092


Gallus gallus

Features
Gene ID: ENSGALG00000017092
  
Biological name :PAN3
  
Synonyms : PAN3 / PAN3 poly(A) specific ribonuclease subunit
  
Possible biological names infered from orthology : PAN2-PAN3 deadenylation complex subunit Pan3 / Q58A45 / Q640Q5
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 175945883
Gene end: 176020918
  
Corresponding Affymetrix probe sets: Gga.13552.1.S1_at (Chicken Array)   Gga.16885.1.S1_s_at (Chicken Array)   Gga.18898.1.S1_at (Chicken Array)   Gga.9959.1.S1_s_at (Chicken Array)   GgaAffx.25166.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000048050
Ensembl peptide - ENSGALP00000027557
NCBI entrez gene - 418926     See in Manteia.
RefSeq - XM_015278762
RefSeq - XM_015278750
RefSeq - XM_015278755
RefSeq - XM_015278707
RefSeq - XM_015278710
RefSeq - XM_015278716
RefSeq - XM_015278717
RefSeq - XM_015278721
RefSeq - XM_015278725
RefSeq - XM_015278729
RefSeq - XM_015278731
RefSeq - XM_015278733
RefSeq - XM_015278741
RefSeq - XM_015278744
swissprot - F1P381
swissprot - A0A1D5P5S7
Ensembl - ENSGALG00000017092
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pan3ENSDARG00000031637Danio rerio
 PAN3ENSG00000152520Homo sapiens
 Pan3ENSMUSG00000029647Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000719  Protein kinase domain
 IPR011009  Protein kinase-like domain superfamily
 IPR030844  PAN2-PAN3 deadenylation complex subunit PAN3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IEA
 biological_processGO:0000289 nuclear-transcribed mRNA poly(A) tail shortening IEA
 biological_processGO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006468 protein phosphorylation IEA
 biological_processGO:0006605 protein targeting IEA
 biological_processGO:0010606 positive regulation of cytoplasmic mRNA processing body assembly IEA
 biological_processGO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic IEA
 cellular_componentGO:0000932 P-body IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0031251 PAN complex IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004535 poly(A)-specific ribonuclease activity IEA
 molecular_functionGO:0004672 protein kinase activity IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
Deadenylation of mRNA


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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