ENSMUSG00000029647


Mus musculus

Features
Gene ID: ENSMUSG00000029647
  
Biological name :Pan3
  
Synonyms : PAN2-PAN3 deadenylation complex subunit Pan3 / Pan3 / Q640Q5
  
Possible biological names infered from orthology : PAN3 poly(A) specific ribonuclease subunit / Q58A45
  
Species: Mus musculus
  
Chr. number: 5
Strand: 1
Band: G3
Gene start: 147430161
Gene end: 147548502
  
Corresponding Affymetrix probe sets: 10527575 (MoGene1.0st)   1428768_at (Mouse Genome 430 2.0 Array)   1437883_s_at (Mouse Genome 430 2.0 Array)   1447895_x_at (Mouse Genome 430 2.0 Array)   1458465_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000144495
Ensembl peptide - ENSMUSP00000135673
Ensembl peptide - ENSMUSP00000135729
Ensembl peptide - ENSMUSP00000031651
Ensembl peptide - ENSMUSP00000134810
Ensembl peptide - ENSMUSP00000134911
Ensembl peptide - ENSMUSP00000134989
Ensembl peptide - ENSMUSP00000135367
Ensembl peptide - ENSMUSP00000135477
NCBI entrez gene - 72587     See in Manteia.
MGI - MGI:1919837
RefSeq - XM_017321113
RefSeq - XM_006504868
RefSeq - XM_006504869
RefSeq - XM_006504870
RefSeq - XM_006504871
RefSeq - XM_006504872
RefSeq - XM_006504873
RefSeq - XM_006504874
RefSeq - XM_006504877
RefSeq - XM_006504878
RefSeq - XM_011241014
RefSeq - NM_028291
RefSeq Peptide - NP_082567
swissprot - H3BJH6
swissprot - H3BKF3
swissprot - H3BKQ1
swissprot - H3BL68
swissprot - H3BLB9
swissprot - H3BJ17
swissprot - A0A0J9YV55
swissprot - H3BJA8
swissprot - Q640Q5
Ensembl - ENSMUSG00000029647
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pan3ENSDARG00000031637Danio rerio
 PAN3ENSGALG00000017092Gallus gallus
 PAN3ENSG00000152520Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000571  Zinc finger, CCCH-type
 IPR000719  Protein kinase domain
 IPR011009  Protein kinase-like domain superfamily
 IPR030844  PAN2-PAN3 deadenylation complex subunit PAN3
 IPR036855  Zinc finger, CCCH-type superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IEA
 biological_processGO:0000289 nuclear-transcribed mRNA poly(A) tail shortening IEA
 biological_processGO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IMP
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006468 protein phosphorylation IEA
 biological_processGO:0006605 protein targeting IDA
 biological_processGO:0010606 positive regulation of cytoplasmic mRNA processing body assembly IEA
 biological_processGO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic IEA
 cellular_componentGO:0000932 P-body IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0031251 PAN complex IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004535 poly(A)-specific ribonuclease activity IEA
 molecular_functionGO:0004672 protein kinase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Deadenylation of mRNA


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000005682 Pan2 / Q8BGF7 / PAN2-PAN3 deadenylation complex catalytic subunit Pan2 / Q504Q3* / PAN2 poly(A) specific ribonuclease subunit*  / complex






 

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