ENSDARG00000031637


Danio rerio

Features
Gene ID: ENSDARG00000031637
  
Biological name :pan3
  
Synonyms : pan3 / PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)
  
Possible biological names infered from orthology : PAN2-PAN3 deadenylation complex subunit Pan3 / PAN3 poly(A) specific ribonuclease subunit / Q58A45 / Q640Q5
  
Species: Danio rerio
  
Chr. number: 24
Strand: 1
Band:
Gene start: 21720304
Gene end: 21748700
  
Corresponding Affymetrix probe sets: Dr.22318.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000048272
Ensembl peptide - ENSDARP00000112767
NCBI entrez gene - 100126012     See in Manteia.
RefSeq - NM_001105692
RefSeq Peptide - NP_001099162
swissprot - F1RCV8
swissprot - E7EXP6
ZFIN ID - ZDB-GENE-070928-13
Ensembl - ENSDARG00000031637
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PAN3ENSGALG00000017092Gallus gallus
 PAN3ENSG00000152520Homo sapiens
 Pan3ENSMUSG00000029647Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000571  Zinc finger, CCCH-type
 IPR011009  Protein kinase-like domain superfamily
 IPR030844  PAN2-PAN3 deadenylation complex subunit PAN3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IEA
 biological_processGO:0000289 nuclear-transcribed mRNA poly(A) tail shortening IBA
 biological_processGO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA IBA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0010606 positive regulation of cytoplasmic mRNA processing body assembly IEA
 biological_processGO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic IEA
 cellular_componentGO:0000932 P-body IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0031251 PAN complex IBA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004535 poly(A)-specific ribonuclease activity IBA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Deadenylation of mRNA


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000074675 pan2 / PAN2 poly(A) specific ribonuclease subunit homolog (S. cerevisiae) / Q504Q3* / Q8BGF7* / PAN2 poly(A) specific ribonuclease subunit* / PAN2-PAN3 deadenylation complex catalytic subunit Pan2 *  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr