ENSGALG00000017142


Gallus gallus

Features
Gene ID: ENSGALG00000017142
  
Biological name :PSPC1
  
Synonyms : Paraspeckle component 1 / PSPC1 / Q5ZK88
  
Possible biological names infered from orthology : Q8R326 / Q8WXF1
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 179181002
Gene end: 179243149
  
Corresponding Affymetrix probe sets: Gga.4178.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000035658
Ensembl peptide - ENSGALP00000063770
Ensembl peptide - ENSGALP00000048141
NCBI entrez gene - 418955     See in Manteia.
RefSeq - NM_001030831
RefSeq Peptide - NP_001026002
swissprot - A0A1L1RY39
swissprot - A0A1D5P617
swissprot - Q5ZK88
Ensembl - ENSGALG00000017142
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pspc1ENSDARG00000006621Danio rerio
 PSPC1ENSG00000121390Homo sapiens
 Pspc1ENSMUSG00000021938Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NONO / non-POU domain containing octamer binding / Q15233* / Q99K48* / non-POU-domain-containing, octamer binding protein*ENSGALG0000000550755
SFPQ / splicing factor proline and glutamine rich / P23246* / Q8VIJ6*ENSGALG0000000251454


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily
 IPR012975  NOPS


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0002218 activation of innate immune response IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IBA
 biological_processGO:0042752 regulation of circadian rhythm IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0048511 rhythmic process IEA
 cellular_componentGO:0001650 fibrillar center IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016363 nuclear matrix IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0042382 paraspeckles IEA
 molecular_functionGO:0000976 transcription regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0001047 core promoter binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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