ENSGALG00000002514


Gallus gallus

Features
Gene ID: ENSGALG00000002514
  
Biological name :SFPQ
  
Synonyms : SFPQ / splicing factor proline and glutamine rich
  
Possible biological names infered from orthology : P23246 / Q8VIJ6
  
Species: Gallus gallus
  
Chr. number: 23
Strand: 1
Band:
Gene start: 4405779
Gene end: 4419940
  
Corresponding Affymetrix probe sets: Gga.4684.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000049031
Ensembl peptide - ENSGALP00000054921
Ensembl peptide - ENSGALP00000003954
NCBI entrez gene - 395803     See in Manteia.
RefSeq - XM_015297814
RefSeq - XM_015297811
RefSeq - XM_015297812
RefSeq - XM_015297813
RefSeq - XM_004947778
RefSeq - XM_015297810
swissprot - A0A1D5PPW4
swissprot - F1P555
swissprot - A0A1D5P8I3
Ensembl - ENSGALG00000002514
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sfpqENSDARG00000011564Danio rerio
 SFPQENSG00000116560Homo sapiens
 SfpqENSMUSG00000028820Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PSPC1 / Q5ZK88 / Paraspeckle component 1 / Q8R326* / Q8WXF1*ENSGALG0000001714244
NONO / non-POU domain containing octamer binding / Q15233* / Q99K48* / non-POU-domain-containing, octamer binding protein*ENSGALG0000000550741


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily
 IPR012975  NOPS


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0000380 alternative mRNA splicing, via spliceosome IEA
 biological_processGO:0000724 double-strand break repair via homologous recombination IEA
 biological_processGO:0002218 activation of innate immune response IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IBA
 biological_processGO:0006974 cellular response to DNA damage stimulus IEA
 biological_processGO:0042752 regulation of circadian rhythm IEA
 biological_processGO:0042754 negative regulation of circadian rhythm IEA
 biological_processGO:0045876 positive regulation of sister chromatid cohesion IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0051276 chromosome organization IEA
 biological_processGO:0051726 regulation of cell cycle IEA
 biological_processGO:0070932 histone H3 deacetylation IEA
 biological_processGO:1902177 positive regulation of oxidative stress-induced intrinsic apoptotic signaling pathway IEA
 cellular_componentGO:0000785 chromatin IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0016363 nuclear matrix IEA
 cellular_componentGO:0042382 paraspeckles IEA
 cellular_componentGO:0090575 RNA polymerase II transcription factor complex IEA
 molecular_functionGO:0000976 transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0000980 RNA polymerase II distal enhancer sequence-specific DNA binding IEA
 molecular_functionGO:0001047 core promoter binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0042826 histone deacetylase binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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