ENSMUSG00000021938


Mus musculus

Features
Gene ID: ENSMUSG00000021938
  
Biological name :Pspc1
  
Synonyms : Paraspeckle component 1 / Pspc1 / Q8R326
  
Possible biological names infered from orthology : Q8WXF1
  
Species: Mus musculus
  
Chr. number: 14
Strand: -1
Band: C3
Gene start: 56720710
Gene end: 56778316
  
Corresponding Affymetrix probe sets: 10420338 (MoGene1.0st)   1423192_at (Mouse Genome 430 2.0 Array)   1423193_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000022507
Ensembl peptide - ENSMUSP00000125780
Ensembl peptide - ENSMUSP00000133038
NCBI entrez gene - 66645     See in Manteia.
MGI - MGI:1913895
RefSeq - NM_025682
RefSeq - XM_006519393
RefSeq Peptide - NP_079958
swissprot - F7D909
swissprot - Q8R326
Ensembl - ENSMUSG00000021938
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pspc1ENSDARG00000006621Danio rerio
 PSPC1ENSGALG00000017142Gallus gallus
 PSPC1ENSG00000121390Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Nono / Q99K48 / non-POU-domain-containing, octamer binding protein / Q15233* / non-POU domain containing octamer binding*ENSMUSG0000003131154
Sfpq / Q8VIJ6 / Splicing factor, proline- and glutamine-rich / P23246*ENSMUSG0000002882054


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR012975  NOPS
 IPR034522  PSP1, RNA recognition motif 1
 IPR034523  PSP1, RNA recognition motif 2
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0002218 activation of innate immune response ISO
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0042752 regulation of circadian rhythm IMP
 biological_processGO:0045087 innate immune response IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IDA
 biological_processGO:0048511 rhythmic process IEA
 cellular_componentGO:0001650 fibrillar center ISO
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm ISO
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016363 nuclear matrix IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0042382 paraspeckles IDA
 molecular_functionGO:0000976 transcription regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0001047 core promoter binding IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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