ENSGALG00000023135


Gallus gallus

Features
Gene ID: ENSGALG00000023135
  
Biological name :SRP54
  
Synonyms : signal recognition particle 54 / SRP54
  
Possible biological names infered from orthology : P14576 / P61011 / signal recognition particle 54B / Signal recognition particle 54 kDa protein / Srp54b
  
Species: Gallus gallus
  
Chr. number: 5
Strand: 1
Band:
Gene start: 36113710
Gene end: 36125277
  
Corresponding Affymetrix probe sets: Gga.1375.1.S1_at (Chicken Array)   Gga.1375.2.S1_s_at (Chicken Array)   Gga.1375.3.S1_s_at (Chicken Array)   GgaAffx.6313.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000016308
NCBI entrez gene - 423322     See in Manteia.
RefSeq - XM_421238
swissprot - E1C6G6
Ensembl - ENSGALG00000023135
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 srp54ENSDARG00000098367Danio rerio
 SRP54ENSG00000100883Homo sapiens
 Srp54ENSMUSG00000112449Mus musculus
 Srp54ENSMUSG00000073079Mus musculus
 Srp54bENSMUSG00000079108Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000897  Signal recognition particle, SRP54 subunit, GTPase domain
 IPR003593  AAA+ ATPase domain
 IPR004125  Signal recognition particle, SRP54 subunit, M-domain
 IPR006325  Signal recognition particle, SRP54 subunit, eukaryotic
 IPR013822  Signal recognition particle, SRP54 subunit, helical bundle
 IPR022941  Signal recognition particle, SRP54 subunit
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006614 SRP-dependent cotranslational protein targeting to membrane IEA
 biological_processGO:0042493 response to drug IEA
 biological_processGO:0045047 protein targeting to ER IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005786 signal recognition particle, endoplasmic reticulum targeting IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0048500 signal recognition particle IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA
 molecular_functionGO:0008144 drug binding IEA
 molecular_functionGO:0008312 7S RNA binding IEA
 molecular_functionGO:0019003 GDP binding IEA
 molecular_functionGO:0030942 endoplasmic reticulum signal peptide binding IEA
 molecular_functionGO:0043021 ribonucleoprotein complex binding IEA


Pathways (from Reactome)
Pathway description
SRP-dependent cotranslational protein targeting to membrane


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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