ENSGALG00000027213


Gallus gallus

Features
Gene ID: ENSGALG00000027213
  
Biological name :ALX1
  
Synonyms : ALX1 / ALX homeobox 1
  
Possible biological names infered from orthology : ALX homeobox protein 1 / Q15699 / Q8C8B0
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 41853035
Gene end: 41872458
  
Corresponding Affymetrix probe sets: GgaAffx.23470.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000041112
NCBI entrez gene - 427871     See in Manteia.
RefSeq - XM_015283460
RefSeq - XM_425445
swissprot - R4GGE5
Ensembl - ENSGALG00000027213
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 alx1ENSDARG00000062824Danio rerio
 ALX1ENSG00000180318Homo sapiens
 Alx1ENSMUSG00000036602Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ALX4 / ALX homeobox 4 / O35137* / Q9H161* / Homeobox protein aristaless-like 4 *ENSGALG0000003258439
ARX / aristaless related homeobox / O35085* / Q96QS3* / Homeobox protein ARX *ENSGALG0000004260429
ALX3 / ALX homeobox 3 / O70137* / O95076* / Homeobox protein aristaless-like 3 *ENSGALG0000002586722
DRGX / dorsal root ganglia homeobox / A6NNA5* / Prrxl1* / Q8BYH0* / paired related homeobox protein-like 1*ENSGALG0000003082222
RAX2 / Q9PVY0 / Retinal homeobox protein Rx1 / Q96IS3* / retina and anterior neural fold homeobox 2*ENSGALG0000001343121
PHOX2B / paired like homeobox 2b / O35690* / Q99453* / Paired mesoderm homeobox protein 2B *ENSGALG0000001425021
VSX1 / visual system homeobox 1 / Q91V10* / Q9NZR4*ENSGALG0000003757620
ENSGALG0000004658420
VSX2 / visual system homeobox 2 / P58304* / Q61412*ENSGALG0000003351720
UNCX / UNC homeobox / A6NJT0* / O08934*ENSGALG0000003929218
ISX / intestine specific homeobox / A1A546* / Q2M1V0*ENSGALG0000001255718
RAX / retina and anterior neural fold homeobox / O35602* / Q9Y2V3* / Retinal homeobox protein Rx *ENSGALG0000003327915


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR003654  OAR domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR033209  ALX homeobox protein 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0001755 neural crest cell migration IEA
 biological_processGO:0001843 neural tube closure IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0009952 anterior/posterior pattern specification IEA
 biological_processGO:0010718 positive regulation of epithelial to mesenchymal transition IEA
 biological_processGO:0014031 mesenchymal cell development IEA
 biological_processGO:0030326 embryonic limb morphogenesis IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048704 embryonic skeletal system morphogenesis IEA
 biological_processGO:0060021 roof of mouth development IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005667 transcription factor complex IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016604 nuclear body IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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