ENSGALG00000033517


Gallus gallus

Features
Gene ID: ENSGALG00000033517
  
Biological name :VSX2
  
Synonyms : visual system homeobox 2 / VSX2
  
Possible biological names infered from orthology : P58304 / Q61412
  
Species: Gallus gallus
  
Chr. number: 5
Strand: 1
Band:
Gene start: 37868348
Gene end: 37887786
  
Corresponding Affymetrix probe sets: Gga.289.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000048165
NCBI entrez gene - 395536     See in Manteia.
RefSeq - NM_204768
RefSeq Peptide - NP_990099
swissprot - A0A1D5P641
Ensembl - ENSGALG00000033517
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VSX2ENSG00000119614Homo sapiens
 Vsx2ENSMUSG00000021239Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
VSX1 / visual system homeobox 1 / Q91V10* / Q9NZR4*ENSGALG0000003757637
ARX / aristaless related homeobox / O35085* / Q96QS3* / Homeobox protein ARX *ENSGALG0000004260423
ALX4 / ALX homeobox 4 / O35137* / Q9H161* / Homeobox protein aristaless-like 4 *ENSGALG0000003258422
DRGX / dorsal root ganglia homeobox / A6NNA5* / Prrxl1* / Q8BYH0* / paired related homeobox protein-like 1*ENSGALG0000003082219
RAX2 / Q9PVY0 / Retinal homeobox protein Rx1 / Q96IS3* / retina and anterior neural fold homeobox 2*ENSGALG0000001343118
ALX1 / ALX homeobox 1 / Q15699* / Q8C8B0* / ALX homeobox protein 1 *ENSGALG0000002721318
ENSGALG0000004658417
UNCX / UNC homeobox / A6NJT0* / O08934*ENSGALG0000003929216
ISX / intestine specific homeobox / A1A546* / Q2M1V0*ENSGALG0000001255715
PHOX2B / paired like homeobox 2b / O35690* / Q99453* / Paired mesoderm homeobox protein 2B *ENSGALG0000001425015
RAX / retina and anterior neural fold homeobox / O35602* / Q9Y2V3* / Retinal homeobox protein Rx *ENSGALG0000003327915
ALX3 / ALX homeobox 3 / O70137* / O95076* / Homeobox protein aristaless-like 3 *ENSGALG0000002586714


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR003654  OAR domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR023339  CVC domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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