ENSGALG00000033279


Gallus gallus

Features
Gene ID: ENSGALG00000033279
  
Biological name :RAX
  
Synonyms : RAX / retina and anterior neural fold homeobox
  
Possible biological names infered from orthology : O35602 / Q9Y2V3 / Retinal homeobox protein Rx
  
Species: Gallus gallus
  
Chr. number: Z
Strand: -1
Band:
Gene start: 921365
Gene end: 923074
  
Corresponding Affymetrix probe sets: Gga.27.1.S1_at (Chicken Array)   Gga.27.2.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000057093
Ensembl peptide - ENSGALP00000043973
NCBI entrez gene - 100677794     See in Manteia.
RefSeq - NM_001243724
RefSeq Peptide - NP_001230653
swissprot - Q8AYJ4
swissprot - A0A1D5PVW5
Ensembl - ENSGALG00000033279
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rx3ENSDARG00000052893Danio rerio
 RAXENSG00000134438Homo sapiens
 RaxENSMUSG00000024518Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RAX2 / Q9PVY0 / Retinal homeobox protein Rx1 / Q96IS3* / retina and anterior neural fold homeobox 2*ENSGALG0000001343130
ARX / aristaless related homeobox / O35085* / Q96QS3* / Homeobox protein ARX *ENSGALG0000004260421
ALX4 / ALX homeobox 4 / O35137* / Q9H161* / Homeobox protein aristaless-like 4 *ENSGALG0000003258419
VSX2 / visual system homeobox 2 / P58304* / Q61412*ENSGALG0000003351718
DRGX / dorsal root ganglia homeobox / A6NNA5* / Prrxl1* / Q8BYH0* / paired related homeobox protein-like 1*ENSGALG0000003082216
ALX1 / ALX homeobox 1 / Q15699* / Q8C8B0* / ALX homeobox protein 1 *ENSGALG0000002721315
VSX1 / visual system homeobox 1 / Q91V10* / Q9NZR4*ENSGALG0000003757615
PHOX2B / paired like homeobox 2b / O35690* / Q99453* / Paired mesoderm homeobox protein 2B *ENSGALG0000001425013
ENSGALG0000004658413
ISX / intestine specific homeobox / A1A546* / Q2M1V0*ENSGALG0000001255712
UNCX / UNC homeobox / A6NJT0* / O08934*ENSGALG0000003929211
ALX3 / ALX homeobox 3 / O70137* / O95076* / Homeobox protein aristaless-like 3 *ENSGALG000000258678


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR003654  OAR domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007389 pattern specification process IEA
 biological_processGO:0007420 brain development IEA
 biological_processGO:0021854 hypothalamus development IEA
 biological_processGO:0043010 camera-type eye development IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0060173 limb development IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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