ENSGALG00000028081


Gallus gallus

Features
Gene ID: ENSGALG00000028081
  
Biological name :ONECUT3
  
Synonyms : ONECUT3 / one cut homeobox 3
  
Possible biological names infered from orthology : O60422 / One cut domain family member 3 / Q8K557
  
Species: Gallus gallus
  
Chr. number: 28
Strand: -1
Band:
Gene start: 2305068
Gene end: 2321940
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSGALP00000041186
NCBI entrez gene - 100857312     See in Manteia.
RefSeq - XM_003642857
swissprot - R4GGL6
Ensembl - ENSGALG00000028081
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 onecut3aENSDARG00000056395Danio rerio
 onecut3bENSDARG00000091059Danio rerio
 O60422ENSG00000205922Homo sapiens
 Q8K557ENSMUSG00000045518Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ONECUT1 / one cut homeobox 1 / O08755* / Q9UBC0* / one cut domain, family member 1*ENSGALG0000003861869
ONECUT2 / one cut homeobox 2 / O95948* / Q6XBJ3* / One cut domain family member 2 *ENSGALG0000003575166
CUX2 / cut like homeobox 2 / O14529* / P70298* / Homeobox protein cut-like 2 *ENSGALG0000000459825
ENSGALG0000002963510
CUX1ENSGALG000000216369


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR003350  CUT domain
 IPR009057  Homeobox-like domain superfamily
 IPR010982  Lambda repressor-like, DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0030154 cell differentiation IBA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048731 system development IBA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005667 transcription factor complex IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IBA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IBA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr