ENSGALG00000029401


Gallus gallus

Features
Gene ID: ENSGALG00000029401
  
Biological name :SIX1
  
Synonyms : SIX1 / SIX homeobox 1
  
Possible biological names infered from orthology : Homeobox protein SIX1 / Q15475 / Q62231
  
Species: Gallus gallus
  
Chr. number: 5
Strand: 1
Band:
Gene start: 54487607
Gene end: 54490069
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSGALP00000058952
Ensembl peptide - ENSGALP00000046244
NCBI entrez gene - 693262     See in Manteia.
RefSeq - NM_001044685
RefSeq Peptide - NP_001038150
swissprot - Q3C2H5
swissprot - A0A1L1RJM7
Ensembl - ENSGALG00000029401
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 six1aENSDARG00000039304Danio rerio
 six1bENSDARG00000026473Danio rerio
 SIX1ENSG00000126778Homo sapiens
 Six1ENSMUSG00000051367Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SIX2 / homeobox protein SIX2 / Q62232* / Q9NPC8* / SIX homeobox 2*ENSGALG0000002330378
SIX3 / SIX homeobox 3 / O95343* / Q62233* / Homeobox protein SIX3 *ENSGALG0000003225950
SIX6 / O93307 / Homeobox protein SIX6 / Q9QZ28* / O95475* / SIX homeobox 6* / sine oculis-related homeobox 6*ENSGALG0000002035949
SIX4 / SIX homeobox 4 / Q61321* / Q9UIU6* / Homeobox protein SIX4 *ENSGALG0000001738948


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR031278  Homeobox protein SIX1
 IPR031701  Homeobox protein SIX1, N-terminal SD domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0001657 ureteric bud development IEA
 biological_processGO:0001658 branching involved in ureteric bud morphogenesis IEA
 biological_processGO:0001759 organ induction IEA
 biological_processGO:0001822 kidney development IEA
 biological_processGO:0003151 outflow tract morphogenesis IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0007389 pattern specification process IEA
 biological_processGO:0007519 skeletal muscle tissue development IEA
 biological_processGO:0007605 sensory perception of sound IEA
 biological_processGO:0008283 cell proliferation IEA
 biological_processGO:0008582 regulation of synaptic growth at neuromuscular junction IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0014842 regulation of skeletal muscle satellite cell proliferation IEA
 biological_processGO:0021610 facial nerve morphogenesis IEA
 biological_processGO:0022008 neurogenesis IEA
 biological_processGO:0030855 epithelial cell differentiation IEA
 biological_processGO:0030878 thyroid gland development IEA
 biological_processGO:0030910 olfactory placode formation IEA
 biological_processGO:0032880 regulation of protein localization IEA
 biological_processGO:0034504 protein localization to nucleus IEA
 biological_processGO:0035909 aorta morphogenesis IEA
 biological_processGO:0042472 inner ear morphogenesis IEA
 biological_processGO:0042474 middle ear morphogenesis IEA
 biological_processGO:0043066 negative regulation of apoptotic process IEA
 biological_processGO:0043524 negative regulation of neuron apoptotic process IEA
 biological_processGO:0043586 tongue development IEA
 biological_processGO:0045664 regulation of neuron differentiation IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048513 animal organ development IEA
 biological_processGO:0048538 thymus development IEA
 biological_processGO:0048665 neuron fate specification IEA
 biological_processGO:0048699 generation of neurons IEA
 biological_processGO:0048701 embryonic cranial skeleton morphogenesis IEA
 biological_processGO:0048704 embryonic skeletal system morphogenesis IEA
 biological_processGO:0048705 skeletal system morphogenesis IEA
 biological_processGO:0048839 inner ear development IEA
 biological_processGO:0048856 anatomical structure development IEA
 biological_processGO:0050678 regulation of epithelial cell proliferation IEA
 biological_processGO:0051451 myoblast migration IEA
 biological_processGO:0060037 pharyngeal system development IEA
 biological_processGO:0061055 myotome development IEA
 biological_processGO:0061197 fungiform papilla morphogenesis IEA
 biological_processGO:0061551 trigeminal ganglion development IEA
 biological_processGO:0071599 otic vesicle development IEA
 biological_processGO:0072001 renal system development IEA
 biological_processGO:0072075 metanephric mesenchyme development IEA
 biological_processGO:0072095 regulation of branch elongation involved in ureteric bud branching IEA
 biological_processGO:0072107 positive regulation of ureteric bud formation IEA
 biological_processGO:0072172 mesonephric tubule formation IEA
 biological_processGO:0072193 ureter smooth muscle cell differentiation IEA
 biological_processGO:0072513 positive regulation of secondary heart field cardioblast proliferation IEA
 biological_processGO:0090103 cochlea morphogenesis IEA
 biological_processGO:0090190 positive regulation of branching involved in ureteric bud morphogenesis IEA
 biological_processGO:0090191 negative regulation of branching involved in ureteric bud morphogenesis IEA
 biological_processGO:2000729 positive regulation of mesenchymal cell proliferation involved in ureter development IEA
 biological_processGO:2001014 regulation of skeletal muscle cell differentiation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005667 transcription factor complex IEA
 cellular_componentGO:0005730 nucleolus IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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