ENSG00000126778


Homo sapiens

Features
Gene ID: ENSG00000126778
  
Biological name :SIX1
  
Synonyms : Q15475 / SIX1 / SIX homeobox 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: -1
Band: q23.1
Gene start: 60643415
Gene end: 60658259
  
Corresponding Affymetrix probe sets: 205817_at (Human Genome U133 Plus 2.0 Array)   228347_at (Human Genome U133 Plus 2.0 Array)   230911_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000247182
Ensembl peptide - ENSP00000452700
Ensembl peptide - ENSP00000494686
NCBI entrez gene - 6495     See in Manteia.
OMIM - 601205
RefSeq - XM_017021602
RefSeq - NM_005982
RefSeq Peptide - NP_005973
swissprot - Q15475
swissprot - H0YK85
Ensembl - ENSG00000126778
  
Related genetic diseases (OMIM): 605192 - Deafness, autosomal dominant 23, 605192
  608389 - Branchiootic syndrome 3, 608389

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 six1aENSDARG00000039304Danio rerio
 six1bENSDARG00000026473Danio rerio
 SIX1ENSGALG00000029401Gallus gallus
 Six1ENSMUSG00000051367Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SIX2 / Q9NPC8 / SIX homeobox 2ENSG0000017057777
SIX4 / Q9UIU6 / SIX homeobox 4ENSG0000010062551
SIX3 / O95343 / SIX homeobox 3ENSG0000013808348
SIX6 / O95475 / SIX homeobox 6ENSG0000018430248
SIX5 / Q8N196 / SIX homeobox 5ENSG0000017704546


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR031278  Homeobox protein SIX1
 IPR031701  Homeobox protein SIX1, N-terminal SD domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0001657 ureteric bud development IEA
 biological_processGO:0001658 branching involved in ureteric bud morphogenesis IEA
 biological_processGO:0001759 organ induction IEA
 biological_processGO:0001822 kidney development IEA
 biological_processGO:0003151 outflow tract morphogenesis IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007389 pattern specification process IEA
 biological_processGO:0007519 skeletal muscle tissue development IEA
 biological_processGO:0007605 sensory perception of sound IEA
 biological_processGO:0008283 cell proliferation IEA
 biological_processGO:0008582 regulation of synaptic growth at neuromuscular junction IEA
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0014842 regulation of skeletal muscle satellite cell proliferation IEA
 biological_processGO:0021610 facial nerve morphogenesis IEA
 biological_processGO:0022008 neurogenesis IEA
 biological_processGO:0030855 epithelial cell differentiation IEA
 biological_processGO:0030878 thyroid gland development IEA
 biological_processGO:0030910 olfactory placode formation IEA
 biological_processGO:0032880 regulation of protein localization IEA
 biological_processGO:0034504 protein localization to nucleus IDA
 biological_processGO:0035909 aorta morphogenesis IEA
 biological_processGO:0042472 inner ear morphogenesis IEA
 biological_processGO:0042474 middle ear morphogenesis IEA
 biological_processGO:0043066 negative regulation of apoptotic process IEA
 biological_processGO:0043524 negative regulation of neuron apoptotic process IEA
 biological_processGO:0043586 tongue development IEA
 biological_processGO:0045664 regulation of neuron differentiation IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048513 animal organ development IEA
 biological_processGO:0048538 thymus development IEA
 biological_processGO:0048665 neuron fate specification IEA
 biological_processGO:0048699 generation of neurons IEA
 biological_processGO:0048701 embryonic cranial skeleton morphogenesis IEA
 biological_processGO:0048704 embryonic skeletal system morphogenesis IEA
 biological_processGO:0048705 skeletal system morphogenesis IEA
 biological_processGO:0048839 inner ear development IEA
 biological_processGO:0048856 anatomical structure development IEA
 biological_processGO:0050678 regulation of epithelial cell proliferation IEA
 biological_processGO:0051451 myoblast migration IEA
 biological_processGO:0060037 pharyngeal system development IEA
 biological_processGO:0061055 myotome development IEA
 biological_processGO:0061197 fungiform papilla morphogenesis IEA
 biological_processGO:0061551 trigeminal ganglion development IEA
 biological_processGO:0071599 otic vesicle development IEA
 biological_processGO:0072001 renal system development IEA
 biological_processGO:0072075 metanephric mesenchyme development IEA
 biological_processGO:0072095 regulation of branch elongation involved in ureteric bud branching IEA
 biological_processGO:0072107 positive regulation of ureteric bud formation IEA
 biological_processGO:0072172 mesonephric tubule formation IEA
 biological_processGO:0072193 ureter smooth muscle cell differentiation IEA
 biological_processGO:0072513 positive regulation of secondary heart field cardioblast proliferation IEA
 biological_processGO:0090103 cochlea morphogenesis IEA
 biological_processGO:0090190 positive regulation of branching involved in ureteric bud morphogenesis IEA
 biological_processGO:0090191 negative regulation of branching involved in ureteric bud morphogenesis IEA
 biological_processGO:1905243 cellular response to 3,3",5-triiodo-L-thyronine IEA
 biological_processGO:2000729 positive regulation of mesenchymal cell proliferation involved in ureter development IEA
 biological_processGO:2001014 regulation of skeletal muscle cell differentiation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005667 transcription factor complex IEA
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IMP
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IMP
 molecular_functionGO:0001223 transcription coactivator binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000003 Multicystic kidney "Multicystic dysplasia of the kidney is characterized by multiple cysts of varying size in the kidney and the absence of a normal pelvocaliceal system. The condition is associated with ureteral or ureteropelvic atresia, and the affected kidney is nonfunctional." [HPO:curators]
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 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000074 Ureteropelvic junction obstruction 
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 HP:0000076 Vesicoureteral reflux "Abnormal (retrograde) movement of urine from the bladder into ureters or kidneys related to inadequacy of the valvular mechanism at the ureterovesicular junction or other causes." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000104 Renal agenesis 
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 HP:0000110 Renal dysplasia 
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 HP:0000113 Polycystic kidney 
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 HP:0000126 Hydronephrosis 
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000193 Bifid uvula "A split or cleft uvula." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000275 Narrow face 
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 HP:0000276 Long face 
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 HP:0000278 Retrognathia 
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 HP:0000324 Facial asymmetry 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000376 Mondini malformation "The normal cochlea has two and one half turns. Mondini malformation refers to the development of only one and a half turns of the cochlea. The defect usually occurs in the seventh week of gestation after development of the basal turn. There is incomplete partition with resulting confluency of the middle and apical turns." [HPO:curators]
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 HP:0000378 Cup-shaped ears "Small auricles that grow forward over the meatus (ear canal)." [HPO:curators]
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 HP:0000384 Preauricular skin tag "A rudimentary tag of ear tissue often containing a core of cartilage and located just in front of the auricle (outer part of the ear)." [HPO:curators]
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 HP:0000402 Stenotic external auditory canal "An abnormal narrowing of the external auditory canal." [HPO:curators]
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000410 Mixed hearing loss 
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 HP:0000413 External auditory canal atresia "Absence or failure to form of the external auditory canal." [HPO:curators]
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 HP:0000614 Abnormality of the lacrimal duct 
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 HP:0000632 Lacrimation abnormality 
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 HP:0000691 Microdontia 
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 HP:0000799 Fatty kidneys 
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 HP:0001374 Congenital hip dislocation 
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 HP:0001425 Heterogeneous 
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 HP:0002060 Abnormality of the cerebrum 
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 HP:0002566 Intestinal malrotation "An abnormality of the intestinal rotation and fixation that normally occurs during the development of the gut. This can lead to volvulus, or twisting of the intestine that causes obstruction and necrosis." [HPO:curators]
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 HP:0002710 Commissural lip pits 
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 HP:0003828 Variable expressivity 
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 HP:0003829 Incomplete penetrance 
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 HP:0004452 Abnormality of the middle ear ossicles "An abnormality of the middle-ear ossicles (three small bones called malleus, incus, and stapes) that are contained within the middle ear and serve to transmit sounds from the air to the fluid-filled labyrinth (cochlea)." [HPO:curators]
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 HP:0004458 bulbous internal auditory canal 
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 HP:0004467 Preauricular sinus "The preauricular sinus is a benign congenital lesion of the preauricular soft tissue consisting of a blind-ending narrow tube or pit. It is also known as preauricular pit, preauricular fistula, preauricular tract and preauricular cyst. It can be asymptomatic or present as an infected and discharging sinus. It presents as a small pit adjacent to the external ear usually located at the anterior margin of the ascending limb of the helix." [HPO:curators]
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 HP:0004712 Malrotation of the kidney 
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 HP:0004742 Abnormality of the renal collecting system 
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 HP:0007678 Nasolacrimal duct stenosis 
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 HP:0007925 Lacrimal duct aplasia or stenosis 
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 HP:0008551 Underdeveloped ears 
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 HP:0008572 External ear malformation 
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 HP:0008586 Hypoplastic cochlea 
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 HP:0008609 Middle ear malformations 
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 HP:0008678 Renal hypoplasia/aplasia 
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 HP:0009795 Branchial fistula "A congenital fistula in the neck resulting from incomplete closure of a branchial cleft." [HPO:curators]
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 HP:0009796 Branchial cyst "A branchial cyst is a remnant of embryonic development resulting from a failure of obliteration of the second branchial cleft and consists of a subcutaneous cystic mass located between the sternocleidomastoid muscle and the pharynx." [HPO:curators]
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 HP:0009797 Cholesteatoma "Cholesteatoma is a benign but potentially destructive growth consisting of keratinizing epithelium located in the middle ear and/or mastoid process." [HPO:curators]
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 HP:0009798 Euthyroid goiter "A goiter (enlargement of the thyroid gland) that is not associated with functional thyroid abnormalities." [HPO:curators]
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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 HP:0011094 Overbite "Maxillary teeth cover the mandibular teeth when biting to an increased degree." [HPO:ibailleulforestier]
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 HP:0011388 Enlarged cochlear aqueduct "Increased size of the `cochlear duct` (FMA:61119), i.e., of a duct that communicates between the perilymphatic space and the subarachnoid space, and transmits a vein from the cochlea to join the internal jugular." [DDD:dfitzpatrick]
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 HP:0011481 Abnormality of the lacrimal duct "An abnormality of the ` lacrimal duct` (FMA:61063), a duct that drain tears from the conjunctiva, via the lacrimal puncta, into the lacrimal sac." [HPO:probinson]
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 HP:0100267 Lip pits 
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 HP:0100274 Gustatory lacrimation "Gustatory lacrimation results from an aberrant innervation of fibres from the seventh cranial nerve to the pterygopalatine ganglion which are destined originally for the submandibular ganglion. This aberrant innervation leads to uncontrollable tearing while eating or in anticipation of a meal." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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