ENSG00000138083


Homo sapiens

Features
Gene ID: ENSG00000138083
  
Biological name :SIX3
  
Synonyms : O95343 / SIX3 / SIX homeobox 3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: p21
Gene start: 44941898
Gene end: 44946077
  
Corresponding Affymetrix probe sets: 206634_at (Human Genome U133 Plus 2.0 Array)   242054_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000260653
NCBI entrez gene - 6496     See in Manteia.
OMIM - 603714
RefSeq - NM_005413
RefSeq Peptide - NP_005404
swissprot - O95343
Ensembl - ENSG00000138083
  
Related genetic diseases (OMIM): 157170 - Holoprosencephaly 2, 157170
  269160 - Schizencephaly, 269160

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 six3aENSDARG00000058008Danio rerio
 six3bENSDARG00000054879Danio rerio
 SIX3ENSGALG00000032259Gallus gallus
 Six3ENSMUSG00000038805Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SIX6 / O95475 / SIX homeobox 6ENSG0000018430261
SIX5 / Q8N196 / SIX homeobox 5ENSG0000017704542
SIX2 / Q9NPC8 / SIX homeobox 2ENSG0000017057742
SIX1 / Q15475 / SIX homeobox 1ENSG0000012677841
SIX4 / Q9UIU6 / SIX homeobox 4ENSG0000010062536


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR031701  Homeobox protein SIX1, N-terminal SD domain
 IPR032949  Homeobox protein SIX3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000060 protein import into nucleus, translocation IEA
 biological_processGO:0001654 eye development IDA
 biological_processGO:0002070 epithelial cell maturation IEA
 biological_processGO:0002088 lens development in camera-type eye IEA
 biological_processGO:0003404 optic vesicle morphogenesis IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006606 protein import into nucleus IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007420 brain development TAS
 biological_processGO:0007601 visual perception TAS
 biological_processGO:0009946 proximal/distal axis specification IEA
 biological_processGO:0014016 neuroblast differentiation IEA
 biological_processGO:0021536 diencephalon development IEA
 biological_processGO:0021537 telencephalon development IEA
 biological_processGO:0021797 forebrain anterior/posterior pattern specification IEA
 biological_processGO:0021798 forebrain dorsal/ventral pattern formation IDA
 biological_processGO:0021846 cell proliferation in forebrain IEA
 biological_processGO:0021978 telencephalon regionalization IEA
 biological_processGO:0021983 pituitary gland development IEA
 biological_processGO:0030178 negative regulation of Wnt signaling pathway IEA
 biological_processGO:0042127 regulation of cell proliferation IEA
 biological_processGO:0043010 camera-type eye development IEA
 biological_processGO:0045665 negative regulation of neuron differentiation IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048512 circadian behavior IEA
 biological_processGO:0060235 lens induction in camera-type eye IEA
 biological_processGO:0061074 regulation of neural retina development IEA
 biological_processGO:0070306 lens fiber cell differentiation IEA
 biological_processGO:0097402 neuroblast migration IEA
 biological_processGO:1901987 regulation of cell cycle phase transition IEA
 biological_processGO:1902692 regulation of neuroblast proliferation IEA
 biological_processGO:1902742 apoptotic process involved in development IEA
 biological_processGO:1990086 lens fiber cell apoptotic process IEA
 biological_processGO:2000177 regulation of neural precursor cell proliferation IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000980 RNA polymerase II distal enhancer sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0001205 transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific DNA binding IEA
 molecular_functionGO:0001222 transcription corepressor binding IPI
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003705 transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding IEA
 molecular_functionGO:0003713 transcription coactivator activity IEA
 molecular_functionGO:0005102 signaling receptor binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042826 histone deacetylase binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000176 Submucous cleft palate "A cleft palate that is covered by the mucous membrane of the roof of the mouth, which can make the cleft more difficult to observe upon physical examination. Soft-palate submucous clefts are characterized by a midline deficiency or lack of muscle tissue. Hard-palate submucous clefts are characterized by bony defects in the midline of the bony palate. It may be possible to detect a submucous cleft palate upon palpation as a notch in the bony palate." [HPO:curators, pmid:19779505]
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 HP:0000193 Bifid uvula "A split or cleft uvula." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000272 Malar hypoplasia "Underdeveloped midface region." [HPO:curators]
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 HP:0000568 Microphthalmos "A developmental anomaly characterized by abnormal smallness of one or both eyes." [HPO:curators]
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 HP:0000601 Hypotelorism 
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 HP:0000835 Adrenal hypoplasia 
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 HP:0000873 Diabetes insipidus "A state of excessive water intake and hypotonic (dilute) polyuria. Diabetes insipidus may be due to failure of vasopressin (AVP) release (central or neurogenic diabetes insipidus) or to a failure of the kidney to respond to AVP (nephrogenic diabetes insipidus)." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001360 Holoprosencephaly "Holoprosencephaly is a structural anomaly of the brain in which the developing forebrain fails to divide into two separate hemispheres and ventricles." [gc:hpe]
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 HP:0001425 Heterogeneous 
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 HP:0002019 Constipation 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0003745 Sporadic 
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 HP:0003828 Variable expressivity 
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 HP:0003829 Incomplete penetrance 
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 HP:0005273 Absent nasal septal cartilage 
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 HP:0006315 Single median maxillary central incisor "The presence of a single, centrally located maxillary `Incisor tooth` (FMA:12823) instead of the normal complement of a left and a right maxillary incisor tooth." [HPO:curators]
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 HP:0008501 Median cleft lip/palate "Cleft lip or palate affecting the midline region of the palate." [HPO:curators]
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 HP:0009914 Cyclopia "Cyclopia is a congenital abnormality in which there is only one eye. That eye is centrally placed in the area normally occupied by the root of the nose." [HPO:curators]
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 HP:0009927 Aplasia of the nose "Complete absence of the nose." [HPO:curators]
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 HP:0010626 Aplasia of the pituitary gland "Absence of the pituitary gland." [HPO:curators]
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 HP:0010636 Schizencephaly "The presence of a cleft in the cerebral cortex unilaterally or bilaterally, usually located in the frontal area." [HPO:curators]
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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