ENSDARG00000058008


Danio rerio

Features
Gene ID: ENSDARG00000058008
  
Biological name :six3a
  
Synonyms : six3a / SIX homeobox 3a
  
Possible biological names infered from orthology : Homeobox protein SIX3 / O95343 / Q62233 / SIX3 / SIX homeobox 3
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 10258007
Gene end: 10261383
  
Corresponding Affymetrix probe sets: Dr.616.1.S1_at (Zebrafish Array)   NM_131362_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000075254
NCBI entrez gene - 30635     See in Manteia.
RefSeq - NM_131362
RefSeq Peptide - NP_571437
swissprot - Q6PCA5
ZFIN ID - ZDB-GENE-990415-127
Ensembl - ENSDARG00000058008
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SIX3ENSGALG00000032259Gallus gallus
 SIX3ENSG00000138083Homo sapiens
 Six3ENSMUSG00000038805Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
six3b / SIX homeobox 3b / SIX3* / Q62233* / O95343* / SIX homeobox 3* / Homeobox protein SIX3 *ENSDARG0000005487988
six6b / SIX homeobox 6b / SIX6* / Q9QZ28* / O95475* / SIX homeobox 6* / sine oculis-related homeobox 6*ENSDARG0000003131667
six6a / SIX homeobox 6a / SIX6* / Q9QZ28* / O95475* / SIX homeobox 6* / sine oculis-related homeobox 6*ENSDARG0000002518767
six7 / SIX homeobox 7ENSDARG0000007010760
six2a / SIX homeobox 2a / SIX2* / Q9NPC8* / Q62232* / SIX homeobox 2* / Homeobox protein SIX2 *ENSDARG0000005800447
six1b / Q6NZ04 / SIX homeobox 1b / SIX1* / Q62231* / Q15475* / SIX homeobox 1* / Homeobox protein SIX1 *ENSDARG0000002647346
six1a / Q6DHF9 / SIX homeobox 1a / SIX1* / Q62231* / Q15475* / SIX homeobox 1* / Homeobox protein SIX1 *ENSDARG0000003930446
six2b / SIX homeobox 2b / SIX2* / Q9NPC8* / Q62232* / SIX homeobox 2* / Homeobox protein SIX2 *ENSDARG0000005487845
six4a / SIX homeobox 4a / SIX4* / Q9UIU6* / Q61321* / SIX homeobox 4* / Homeobox protein SIX4 *ENSDARG0000000469542
six4b / SIX homeobox 4b / SIX4* / Q9UIU6* / Q61321* / SIX homeobox 4* / Homeobox protein SIX4 *ENSDARG0000003198340
six9 / SIX homeobox 9ENSDARG0000006840739
six5 / SIX homeobox 5 / P70178* / Q8N196* / Homeobox protein SIX5 *ENSDARG0000006840636


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR031701  Homeobox protein SIX1, N-terminal SD domain
 IPR032949  Homeobox protein SIX3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001654 eye development IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0007420 brain development IEA
 biological_processGO:0021554 optic nerve development IGI
 biological_processGO:0021631 optic nerve morphogenesis IGI
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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