ENSDARG00000004695


Danio rerio

Features
Gene ID: ENSDARG00000004695
  
Biological name :six4a
  
Synonyms : six4a / SIX homeobox 4a
  
Possible biological names infered from orthology : Homeobox protein SIX4 / Q61321 / Q9UIU6 / SIX4 / SIX homeobox 4
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 31636732
Gene end: 31647323
  
Corresponding Affymetrix probe sets: Dr.9781.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000126337
Ensembl peptide - ENSDARP00000126511
NCBI entrez gene - 65233     See in Manteia.
swissprot - A4IG26
swissprot - K7DY11
ZFIN ID - ZDB-GENE-010201-2
Ensembl - ENSDARG00000004695
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SIX4ENSGALG00000017389Gallus gallus
 SIX4ENSG00000100625Homo sapiens
 Six4ENSMUSG00000034460Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
six4b / SIX homeobox 4b / SIX4* / Q9UIU6* / Q61321* / SIX homeobox 4* / Homeobox protein SIX4 *ENSDARG0000003198347
six5 / SIX homeobox 5 / P70178* / Q8N196* / Homeobox protein SIX5 *ENSDARG0000006840632
six2b / SIX homeobox 2b / SIX2* / Q9NPC8* / Q62232* / SIX homeobox 2* / Homeobox protein SIX2 *ENSDARG0000005487824
six2a / SIX homeobox 2a / SIX2* / Q9NPC8* / Q62232* / SIX homeobox 2* / Homeobox protein SIX2 *ENSDARG0000005800424
six1a / Q6DHF9 / SIX homeobox 1a / SIX1* / Q62231* / Q15475* / SIX homeobox 1* / Homeobox protein SIX1 *ENSDARG0000003930423
six1b / Q6NZ04 / SIX homeobox 1b / SIX1* / Q62231* / Q15475* / SIX homeobox 1* / Homeobox protein SIX1 *ENSDARG0000002647323
six9 / SIX homeobox 9ENSDARG0000006840721
six3b / SIX homeobox 3b / SIX3* / Q62233* / O95343* / SIX homeobox 3* / Homeobox protein SIX3 *ENSDARG0000005487921
six3a / SIX homeobox 3a / SIX3* / Q62233* / O95343* / SIX homeobox 3* / Homeobox protein SIX3 *ENSDARG0000005800821
six6a / SIX homeobox 6a / SIX6* / Q9QZ28* / O95475* / SIX homeobox 6* / sine oculis-related homeobox 6*ENSDARG0000002518720
six6b / SIX homeobox 6b / SIX6* / Q9QZ28* / O95475* / SIX homeobox 6* / sine oculis-related homeobox 6*ENSDARG0000003131620
six7 / SIX homeobox 7ENSDARG0000007010719


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR031701  Homeobox protein SIX1, N-terminal SD domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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