ENSG00000177045


Homo sapiens

Features
Gene ID: ENSG00000177045
  
Biological name :SIX5
  
Synonyms : Q8N196 / SIX5 / SIX homeobox 5
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: -1
Band: q13.32
Gene start: 45764785
Gene end: 45769226
  
Corresponding Affymetrix probe sets: 217661_x_at (Human Genome U133 Plus 2.0 Array)   229009_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000453239
Ensembl peptide - ENSP00000494267
Ensembl peptide - ENSP00000481365
Ensembl peptide - ENSP00000316842
Ensembl peptide - ENSP00000453189
NCBI entrez gene - 147912     See in Manteia.
OMIM - 600963
RefSeq - NM_175875
RefSeq Peptide - NP_787071
swissprot - Q8N196
swissprot - H0YLK1
swissprot - H0YLF6
swissprot - A0A087WXX3
Ensembl - ENSG00000177045
  
Related genetic diseases (OMIM): 610896 - Branchiootorenal syndrome 2, 610896

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 six5ENSDARG00000068406Danio rerio
 Six5ENSMUSG00000040841Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SIX4 / Q9UIU6 / SIX homeobox 4ENSG0000010062532
SIX2 / Q9NPC8 / SIX homeobox 2ENSG0000017057719
SIX3 / O95343 / SIX homeobox 3ENSG0000013808319
SIX1 / Q15475 / SIX homeobox 1ENSG0000012677818
SIX6 / O95475 / SIX homeobox 6ENSG0000018430216


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR017970  Homeobox, conserved site
 IPR031701  Homeobox protein SIX1, N-terminal SD domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002088 lens development in camera-type eye IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007286 spermatid development IEA
 biological_processGO:0008285 negative regulation of cell proliferation IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:1902723 negative regulation of skeletal muscle satellite cell proliferation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding NAS
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000003 Multicystic kidney "Multicystic dysplasia of the kidney is characterized by multiple cysts of varying size in the kidney and the absence of a normal pelvocaliceal system. The condition is associated with ureteral or ureteropelvic atresia, and the affected kidney is nonfunctional." [HPO:curators]
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 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000074 Ureteropelvic junction obstruction 
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 HP:0000076 Vesicoureteral reflux "Abnormal (retrograde) movement of urine from the bladder into ureters or kidneys related to inadequacy of the valvular mechanism at the ureterovesicular junction or other causes." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000110 Renal dysplasia 
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 HP:0000126 Hydronephrosis 
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000278 Retrognathia 
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 HP:0000365 Hearing loss 
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 HP:0000384 Preauricular skin tag "A rudimentary tag of ear tissue often containing a core of cartilage and located just in front of the auricle (outer part of the ear)." [HPO:curators]
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 HP:0000402 Stenotic external auditory canal "An abnormal narrowing of the external auditory canal." [HPO:curators]
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 HP:0000413 External auditory canal atresia "Absence or failure to form of the external auditory canal." [HPO:curators]
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 HP:0004452 Abnormality of the middle ear ossicles "An abnormality of the middle-ear ossicles (three small bones called malleus, incus, and stapes) that are contained within the middle ear and serve to transmit sounds from the air to the fluid-filled labyrinth (cochlea)." [HPO:curators]
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 HP:0008572 External ear malformation 
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 HP:0008586 Hypoplastic cochlea 
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 HP:0008678 Renal hypoplasia/aplasia 
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 HP:0009796 Branchial cyst "A branchial cyst is a remnant of embryonic development resulting from a failure of obliteration of the second branchial cleft and consists of a subcutaneous cystic mass located between the sternocleidomastoid muscle and the pharynx." [HPO:curators]
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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 HP:0011332 Hemifacial hypoplasia "Unilateral underdevelopment of the facial tissues, including muscles and bones." [DDD:awilkie]
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 HP:0011388 Enlarged cochlear aqueduct "Increased size of the `cochlear duct` (FMA:61119), i.e., of a duct that communicates between the perilymphatic space and the subarachnoid space, and transmits a vein from the cochlea to join the internal jugular." [DDD:dfitzpatrick]
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 HP:0011481 Abnormality of the lacrimal duct "An abnormality of the ` lacrimal duct` (FMA:61063), a duct that drain tears from the conjunctiva, via the lacrimal puncta, into the lacrimal sac." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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