ENSGALG00000029678


Gallus gallus

Features
Gene ID: ENSGALG00000029678
  
Biological name :SNX16
  
Synonyms : SNX16 / sorting nexin 16
  
Possible biological names infered from orthology : P57768 / Q8C080
  
Species: Gallus gallus
  
Chr. number: 2
Strand: -1
Band:
Gene start: 122059414
Gene end: 122083050
  
Corresponding Affymetrix probe sets: Gga.10405.1.S1_s_at (Chicken Array)   GgaAffx.24775.1.S1_at (Chicken Array)   GgaAffx.24775.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000045385
NCBI entrez gene - 420202     See in Manteia.
RefSeq - XM_015282795
RefSeq - NM_001199488
RefSeq - XM_015282793
RefSeq - XM_015282794
RefSeq - XM_015282792
RefSeq Peptide - NP_001186417
swissprot - E1C244
Ensembl - ENSGALG00000029678
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snx16ENSDARG00000046072Danio rerio
 SNX16ENSG00000104497Homo sapiens
 Snx16ENSMUSG00000027534Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001683  Phox homologous domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006622 protein targeting to lysosome IEA
 biological_processGO:0008333 endosome to lysosome transport IEA
 biological_processGO:0045022 early endosome to late endosome transport IEA
 cellular_componentGO:0005769 early endosome IEA
 cellular_componentGO:0005770 late endosome IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0031313 extrinsic component of endosome membrane IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 molecular_functionGO:0035091 phosphatidylinositol binding IBA
 molecular_functionGO:0042802 identical protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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