ENSMUSG00000027534


Mus musculus

Features
Gene ID: ENSMUSG00000027534
  
Biological name :Snx16
  
Synonyms : Q8C080 / Snx16 / sorting nexin 16
  
Possible biological names infered from orthology : P57768
  
Species: Mus musculus
  
Chr. number: 3
Strand: -1
Band: A1
Gene start: 10417817
Gene end: 10440102
  
Corresponding Affymetrix probe sets: 10497309 (MoGene1.0st)   1424276_at (Mouse Genome 430 2.0 Array)   1438803_s_at (Mouse Genome 430 2.0 Array)   1456041_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000029047
Ensembl peptide - ENSMUSP00000096828
Ensembl peptide - ENSMUSP00000141230
NCBI entrez gene - 74718     See in Manteia.
MGI - MGI:1921968
RefSeq - XM_011248147
RefSeq - NM_001127191
RefSeq - NM_029068
RefSeq Peptide - NP_083344
RefSeq Peptide - NP_001120663
swissprot - Q3TLM7
swissprot - Q8BLP0
swissprot - Q8C080
Ensembl - ENSMUSG00000027534
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snx16ENSDARG00000046072Danio rerio
 SNX16ENSGALG00000029678Gallus gallus
 SNX16ENSG00000104497Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001683  Phox homologous domain
 IPR036871  PX domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006622 protein targeting to lysosome IEA
 biological_processGO:0008333 endosome to lysosome transport IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0045022 early endosome to late endosome transport IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005769 early endosome IEA
 cellular_componentGO:0005770 late endosome IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031313 extrinsic component of endosome membrane IEA
 cellular_componentGO:0031901 early endosome membrane IEA
 cellular_componentGO:0031902 late endosome membrane IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 molecular_functionGO:0008289 lipid binding IEA
 molecular_functionGO:0035091 phosphatidylinositol binding IBA
 molecular_functionGO:0042802 identical protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr